Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19h15
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   5.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.5  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   10.0 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   10.0 
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   10.0 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   10.0 

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -2

Query: 96  RHDRVGDGEKSDNEGAFEHHKEQSSRTNHANN 1
           RH    D + ++      HH  +S+   H NN
Sbjct: 433 RHSSKSDNQNNNQHNDQAHHSSKSN-NRHNNN 463


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/36 (19%), Positives = 20/36 (55%)
 Frame = +1

Query: 88  VVALSSFKNWSRKAFYHKIDLCTQSCYSQIIPGLYL 195
           +VAL S+  ++   +   + +CT +  + ++ G+ +
Sbjct: 298 LVALGSYNKFNNNVYKDALIVCTVNSCTSMLSGIVI 333


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/36 (19%), Positives = 20/36 (55%)
 Frame = +1

Query: 88  VVALSSFKNWSRKAFYHKIDLCTQSCYSQIIPGLYL 195
           +VAL S+  ++   +   + +CT +  + ++ G+ +
Sbjct: 351 LVALGSYNKFNNNVYKDALIVCTVNSCTSMLSGIVI 386


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 457 PGSQTWKHQSDSGRARCPPVGPHQ 386
           PG Q   HQS     R  P  P Q
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQ 44


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 220 CRLQRGHCSNRGPE 179
           C L  G C+N G E
Sbjct: 46  CMLDEGPCTNEGRE 59


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 95  RFPASRTGLGRPSTTRSTSALN 160
           R+P   TGL   S+T S    N
Sbjct: 92  RWPGDATGLSNRSSTSSNDPKN 113


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 220 CRLQRGHCSNRGPE 179
           C L  G C+N G E
Sbjct: 46  CMLDEGPCTNEGRE 59


>AF388659-3|AAK71993.1|  548|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform C
          protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 45 EHHKEQSSRTNHAN 4
          +H+KE+S   +H N
Sbjct: 56 DHNKEKSKNNHHCN 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,175
Number of Sequences: 438
Number of extensions: 3311
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)