Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19h12
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    29   0.29 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    24   8.4  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    24   8.4  

>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 29.1 bits (62), Expect = 0.29
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +2

Query: 149 INMTTKTEMHKTMAKGSSFGRPLQA*LTKR--IPD--SILDAFL-KYNYHHKITIKD 304
           I  TT  E  K + K ++F R  Q  L K   I D  SIL     KY  HH +TI D
Sbjct: 315 IGATTLAEYKKYIEKDAAFERRFQIILVKEPSIEDTISILRGLKEKYEVHHGVTISD 371


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -2

Query: 252 IESGIRFVSHAWSGLPKLLPFAIVLC--ISVFVVILI 148
           +E+ I+ +S      P +LP  ++LC  IS+F +IL+
Sbjct: 235 VEAAIQKLSIKPLAFPNVLPQVLLLCPSISIFNLILL 271


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 137 HTPLINMTTKTEMHKTMAKGSSFGRP 214
           HTP +N T+  +         S+GRP
Sbjct: 263 HTPPLNYTSSVDSSPQRMASDSYGRP 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,214
Number of Sequences: 5004
Number of extensions: 19376
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)