Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19h12
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    24   0.80 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   9.9  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 0.80
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 41  NYVNLYDMYQNHNKRMSVGIN 103
           NY N  + Y N+NK++   IN
Sbjct: 93  NYNNYNNNYNNYNKKLYYNIN 113



 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 127 LNATYSFN*YDDENGNA*NYGK 192
           L+  Y+++ Y++ N N  NY K
Sbjct: 85  LSNNYNYSNYNNYNNNYNNYNK 106


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 32  RCDNYVNLYDMYQNHNKRMSVGINRGDN 115
           RC N+ N  + + NHN   +   ++ DN
Sbjct: 413 RCANFDNQDNNHYNHNHNQARHSSKSDN 440


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 225 HAWSGLPKLLPFAIVLCISVFVVILI 148
           + W     L+ ++  LCIS+  +I++
Sbjct: 388 YTWRHTSVLIGWSAFLCISLVYIIML 413


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 239 IPDSILDAFLKYNYHHK 289
           +  S++   L  NYHH+
Sbjct: 305 VASSVVSTILILNYHHR 321


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 38  DNYVNLYDMYQNHN 79
           +NY N Y+ Y N+N
Sbjct: 328 NNYNNNYNNYNNYN 341



 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 38  DNYVNLYDMYQNHNKRMSVGIN 103
           +NY N  + Y N+ K++   IN
Sbjct: 335 NNYNNYNNNYNNNYKKLYYNIN 356


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 38  DNYVNLYDMYQNHN 79
           +NY N Y+ Y N+N
Sbjct: 332 NNYNNNYNNYNNNN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,142
Number of Sequences: 438
Number of extensions: 1620
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)