Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19h11
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 42 1e-04
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 38 0.002
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 28 1.3
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 28 1.3
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 2.2
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 27 2.2
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c... 26 5.1
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 6.8
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 6.8
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 25 9.0
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 9.0
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 466 PVILYCHGNSNHRASPHRLKIYSVFQE-LNFHVVTFDYRGYGDSTKVKPTERGV 624
P +LY H N+ + HRL I VF LN +V YRGYG ST P+E G+
Sbjct: 90 PTLLYFHANAGNMG--HRLPIARVFYSALNMNVFIISYRGYGKSTG-SPSEAGL 140
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 412 VADLKTNNTFHELKNSRNPVILYCHGNSNH-RASPHRLKIYSVFQELNFHVVTFDYRGYG 588
+ADL T + + ++K+ +++ HG H A P + + E N V TFD RG+G
Sbjct: 1 MADLYTKD-WTDVKDKPVARVVFIHGFGEHVNAYP---EFFEALNERNIEVYTFDQRGFG 56
Query: 589 DSTKVKPTERG 621
S K P ++G
Sbjct: 57 HSRKGGPKKQG 67
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 256 CINFPRNLNYDSPSSCSVTCGRNLNIEFRSIVDN 357
CI RNLNY+ SC V + +E S+ D+
Sbjct: 631 CIKKRRNLNYNENLSCKVDLDKKKMLETLSLSDS 664
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 368 LMRKLSTIERNSMLRFLPHVTLQLDGLS*FKFLG 267
LM + ++++ M +P +TL +DGLS F LG
Sbjct: 98 LMLTTNLLKKDLMSSKVPEITLAIDGLSHFSTLG 131
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 265 FPRNLNYDSPSSCSVTCGRNLNIEFRSIVDNFLIRLGIWHILPN 396
F N++ S CS+ NL+ + R ++ N+ R+G HIL N
Sbjct: 1775 FSENIHTLYFSCCSMIAKENLDDQLRELLKNYFNRVG--HILLN 1816
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 394 NSEIKDVADLKTNNTFHELKNSRNPVILYCHGNSNHRAS 510
N + ++ DLK T E+K S + L H + NH S
Sbjct: 111 NHQYYEILDLKKTCTDTEIKKSYKKLALQLHPDKNHAPS 149
>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 252 REYHFPLDRFIVSEHQGQHGN 190
R Y +P D F+VS + Q GN
Sbjct: 192 RSYFYPQDSFLVSHAEWQDGN 212
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 394 NSEIKDVADLKTNNTFHELKNSRN-PVILYCHGNSNHR 504
N +I DV DL T L N N PV+L+C HR
Sbjct: 136 NPDISDVDDL-VRKTLQLLLNKENWPVLLHC-SRGKHR 171
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +2
Query: 269 RET*TTIARLVAAL---HAGETSTLSSVRSWTI 358
R + TTI R A++ H G+TSTLS RS +I
Sbjct: 309 RSSRTTIRRTGASIRTIHRGKTSTLSGNRSHSI 341
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 445 ELKNSRNPVILYCHGNSNHRASPHRLKIYSVFQE 546
E+ ++NPV+LY G N + + K Y +F E
Sbjct: 127 EITGAQNPVVLYVSG-GNTQVIAYSEKKYRIFGE 159
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 397 SEIKDVADLKTNNTFHELKNSRNPVILYCHGNSN 498
S + D++ + +N FHE+K+S + Y H +SN
Sbjct: 515 SLVCDLSWIYPSNVFHEVKDS---LCFYAHNSSN 545
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,941
Number of Sequences: 5004
Number of extensions: 44530
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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