Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19h09
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.6  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 69  NVF*NDLNNSHINF 110
           NV  NDLN  H+NF
Sbjct: 385 NVLNNDLNLEHVNF 398


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 499 NIEKEQSLYSLWAHEWTKHGTCAASIEPLNCELKYFTKGLEWLKK 633
           NI + Q +YSL+    T+  T    + PL     YF    E L+K
Sbjct: 134 NINEAQYIYSLYTAVITRPDTKFIQLPPLYEMCPYFFFNSEVLQK 178


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 499 NIEKEQSLYSLWAHEWTKHGTCAASIEPLNCELKYFTKGLEWLKK 633
           NI + Q +YSL+    T+  T    + PL     YF    E L+K
Sbjct: 134 NINEAQYIYSLYTAVITRPDTKFIQLPPLYEMCPYFFFNSEVLQK 178


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = +3

Query: 285 IHATLAGDYMQNMDGETYALLYYATRAEFMDYSWYM 392
           ++   +  YM+  +   Y L Y+    E   Y +YM
Sbjct: 202 VNTNYSSKYMREYNDPEYKLDYFMEDVELNAYYYYM 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,253
Number of Sequences: 438
Number of extensions: 4219
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)