Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19h05
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    28   1.5  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   4.7  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    26   6.1  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   8.1  
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    25   8.1  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   8.1  

>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 116 GLVILYMSLFVLIYFGFVGALLYVRSTFSDDFQVFQDETYT*VKQRFL 259
           GL +L ++  VL YF   G+LL +     DD ++ Q E  + ++++ +
Sbjct: 31  GLSLLQIAANVLSYFAVPGSLLLLVGANVDDIELIQHEMESHLEKKLI 78


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 179  LYVRSTFSDDFQVFQDETYT*VKQRFLKYHFILIK 283
            LY R  + D++ V Q+E  +    RFLK    +IK
Sbjct: 1303 LYSRDEYQDEYGVLQEEIESTFSNRFLKILNRIIK 1337


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 122 VILYMSLFVLIYFGFVGALLYVRSTFSDDFQ 214
           V L++ LF L+  G + A L   +T+SDDF+
Sbjct: 390 VPLWVVLFYLMRSGQLDAALQFVNTYSDDFE 420


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 521 FSKLTNCIIISPSSTHVFNYLILYINR*EYLQQEEKRKRNTMY 393
           FS + N ++  PS+ HV+++L +      +  +     RNT+Y
Sbjct: 145 FSSVDNSLVKGPSNVHVYDHLFV-----RHWDRWNTGSRNTLY 182


>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 213 WKSSENVLLTYNRAPTKPKY 154
           W++ ++V L + RAPT P Y
Sbjct: 5   WRNLKSVRLPFRRAPTLPLY 24


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 75  LHFGLFFCFFVSAEC 31
           +H GL+FCFF    C
Sbjct: 307 IHLGLWFCFFFLTAC 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,164
Number of Sequences: 5004
Number of extensions: 65626
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)