Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19h05
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0061 - 422914-423027,423114-423149,423250-423324,423412-42...    31   1.2  
06_01_0225 - 1727461-1728825                                           29   3.7  
03_04_0018 - 16484109-16484300,16484575-16484656,16484746-164848...    28   6.4  

>05_01_0061 -
           422914-423027,423114-423149,423250-423324,423412-423465,
           423554-423620,423912-424025,424114-424215,424220-424269,
           424380-424424,424559-424642,424996-425100,425300-425443,
           425535-425643,425738-425766
          Length = 375

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
 Frame = +1

Query: 511 NFEKRVTNFCYLFLRYYGVCSCYFYYFKREI---IVLPYLYQYVGYCCL--ESFKIKEYV 675
           +++ RV NF    L+ Y +C+ Y +Y KR +   IV  Y Y ++    L  E F  +EY+
Sbjct: 168 HYDGRVLNFEGYLLKIY-LCT-YMWYAKRFLHPDIVAAYEYIFIWDEDLGVEHFNAEEYI 225

Query: 676 KCLCHFHLII 705
           K +  +HL I
Sbjct: 226 KLVKKYHLEI 235


>06_01_0225 - 1727461-1728825
          Length = 454

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +1

Query: 544 LFLRYYGVCSCYFYYFKREIIVL----PYLYQYVGYCCLESFKIKEYV 675
           LF +YY V  CY Y+ +  +  L     Y YQ+  Y   E   +  YV
Sbjct: 370 LFRQYYVVVICYIYFTRVVVYALMTITSYRYQWTSYVAKELATLAFYV 417


>03_04_0018 -
           16484109-16484300,16484575-16484656,16484746-16484856,
           16484937-16485188,16485274-16485677,16486035-16486952,
           16486990-16487475,16487566-16487763
          Length = 880

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = -2

Query: 516 KINKLHHNISFIHSCLQLFDSVYKSLRIFTTRREKKKKHDVYKSLCLTIM*FVFKNVKDI 337
           +I K  H +     C QL     K    +     K+KK +V   L + ++    KNV  +
Sbjct: 689 RICKTQHTVELREDCEQLVGKTPKEKEEYVKSLHKRKKLEVATYLAIAMLAHADKNVLMV 748

Query: 336 P 334
           P
Sbjct: 749 P 749


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,228,715
Number of Sequences: 37544
Number of extensions: 317410
Number of successful extensions: 707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)