Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19h05
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 284 CKKGT*LIKCKMDGSFRGISLTFLNTNYIIVKHKDL 391
           CK+G     C ++ S   +++TF N     VK KD+
Sbjct: 122 CKQGV----CTVEVSSENMTVTFANLGIQCVKKKDI 153


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 284 CKKGT*LIKCKMDGSFRGISLTFLNTNYIIVKHKDL 391
           CK+G     C ++ S   +++TF N     VK KD+
Sbjct: 122 CKQGV----CTVEVSSENMTVTFANLGIQCVKKKDI 153


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = +2

Query: 305 IKCKMDGSFRGISLTFLNTNYIIVKHKDLYTSCFFFFSLLVVNILNDLYTESNS 466
           I    D   +G+   FL   +  +KH  +Y   +F+  + +      L   SNS
Sbjct: 505 ININSDKETKGMMRIFLGPAFDEIKHDMVYLQKYFYLFMEMDRFAVTLRPGSNS 558


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = +2

Query: 305 IKCKMDGSFRGISLTFLNTNYIIVKHKDLYTSCFFFFSLLVVNILNDLYTESNS 466
           I    D   +G+   FL   +  +KH  +Y   +F+  + +      L   SNS
Sbjct: 505 ININSDKETKGMMRIFLGPAFDEIKHDMVYLQKYFYLFMEMDRFAVTLRPGSNS 558


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 107 IFRGLVILYMSLFVLIYFGFVGALLYVR 190
           +F  L +LY  + V+I+ GF   + ++R
Sbjct: 47  MFTYLHLLYQDVHVMIWIGFGFLMTFLR 74


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 119 LVILYMSLFVLIYFGFVGAL 178
           L++L   +FV+ +FG  GA+
Sbjct: 55  LIVLGSIIFVISFFGCCGAI 74


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 562 GVCSCYFYYFKREIIVLPYL 621
           GVC C+ Y    E + + Y+
Sbjct: 368 GVCMCFIYASLLEFVCVNYV 387


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 562 GVCSCYFYYFKREIIVLPYL 621
           GVC C+ Y    E + + Y+
Sbjct: 337 GVCMCFIYASLLEFVCVNYV 356


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 562 GVCSCYFYYFKREIIVLPYL 621
           GVC C+ Y    E + + Y+
Sbjct: 388 GVCMCFIYASLLEFVCVNYV 407


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 562 GVCSCYFYYFKREIIVLPYL 621
           GVC C+ Y    E + + Y+
Sbjct: 337 GVCMCFIYASLLEFVCVNYV 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,046
Number of Sequences: 438
Number of extensions: 4633
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)