Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19h03
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    28   1.2  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   2.1  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    27   2.8  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   2.8  
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    26   3.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   3.7  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   4.8  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    25   6.4  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   8.5  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    25   8.5  

>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +3

Query: 162 ANPPEPPKINWDEYQKSVPIPGLVDKF-KKEYEAFKVPFPQDTLTSKVEEQWKELEPQIK 338
           +NP       W+  Q+ V + G++++  ++E E +    P++   S++   W   + ++ 
Sbjct: 103 SNPYASLSFWWEPLQRQVRVEGIIERLSREETEEYFKTRPRN---SRI-GAWASPQSEVI 158

Query: 339 AFCANLQKEIEASQKELQRIKSLP 410
           A    L+K +E  +K+    +S+P
Sbjct: 159 ADREELEKRVEEYKKKFGEDESVP 182


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = -1

Query: 209 FLIFIPVYFRRLRRVCQYSSQVRVDFTFKSKEISFLFWRNSLFKFYPVY--GRLRKPFGH 36
           F  F P+  RRL     +   + V F+F    + ++ WR   + F   +  G L    GH
Sbjct: 188 FYAFRPLVVRRLPFTLMHFWNIIVQFSFDYLVVRYVGWRALAYFFMSSFLAGSLHPTAGH 247

Query: 35  CIS 27
            +S
Sbjct: 248 FLS 250


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 127 LKAKKLVFCSGGTLFSSSTQFMAGFVNLLAIV 32
           ++  +LVF SGGT   ++  +M G V+ +A++
Sbjct: 322 VEESQLVFRSGGTSMKATAGYMEGSVDCVAMI 353


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 279  QDTLTSKVEEQWKELEPQIKAFCANLQKEIEASQKELQRIKS 404
            Q++ +S  E+  KE   Q+K+     +KE+  S+ EL+ ++S
Sbjct: 1471 QESASSDAEQITKEQFEQLKSEKERTEKELADSKNELEHLQS 1512


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 270 PFPQDTLTSKVEEQWKELEPQ 332
           P P D L + V + WKE EPQ
Sbjct: 114 PNPDDPLDNDVAKIWKENEPQ 134


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
 Frame = +3

Query: 279 QDTLTSKVEEQWKELEPQIKAFCANLQKEIEASQKELQRIK-SLPKFEEM-TMEMFYE-- 446
           Q TL    ++ +    P IKAFC   +  I+  +K+   ++ S  + +E+  +E+  +  
Sbjct: 331 QKTLHDIQQKHYARSWPAIKAFCEKRRNYIKLYKKKFLAVQLSADESKELDVLELNLDIS 390

Query: 447 ---LYPDQALDPVNKPTFWPHTPEEQG 518
              L+   A   +    F P  P++QG
Sbjct: 391 QLKLFRSLAYQEIKNEGFEPQPPKQQG 417


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 210 SVPIPGLVDKFKKEYEAFKVPFPQDTLTSKVEEQWKELEPQ-IKAFCANLQ-KEIEASQK 383
           ++PI   + +   E E  K  FP+    + V + +K L PQ I A   +L+ +EIE   K
Sbjct: 233 NLPIQTHISENTSEIELVKELFPERKSYADVYDYYKLLTPQTILAHAIHLEDEEIELLTK 292

Query: 384 ELQRIKSLP 410
               I   P
Sbjct: 293 RSSGISHCP 301


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 348 ANLQKEIEASQKELQRIKSLPKFEEMTMEMFYELYPDQALDPVNKPTFWP 497
           A+L +E  A  +  +     P      M++F+E Y      P+  P ++P
Sbjct: 208 ADLDEETMAQFRSYKETIHAPVITPKIMDIFFENYQPTPKSPLVNPLYYP 257


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/44 (22%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 297 KVEEQWKELEPQIKAFCANLQKEIEASQKELQR-IKSLPKFEEM 425
           ++E+QW+E   Q++ +   + +E++ +++ L +  K    +EE+
Sbjct: 525 RMEQQWREDVDQLQEYVEEITQELQDTKEVLSKSSKESDDYEEV 568


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = +3

Query: 102 QKTNFFAFKGKVDSYLRRVLANPPEPPKINWDEYQKSVPIPGLVDKFKKEYEAFKVPFPQ 281
           ++T   A K K D  L  +   PPEPPK+        +    + D  K E E  K    +
Sbjct: 307 RQTRAEARKEKQDRQLLGI--EPPEPPKVKLSNLMHVLGDDAIKDPTKIEAEVRK-QVEE 363

Query: 282 DTLTSKVEEQWKELEPQ 332
             L  + E + ++L P+
Sbjct: 364 RRLRHERENEERKLTPE 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,319
Number of Sequences: 5004
Number of extensions: 51173
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)