Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19h03
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical pr...    60   2e-09
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p...    32   0.27 
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p...    32   0.27 
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p...    32   0.27 
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p...    32   0.27 
AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical ...    31   0.83 
Z81111-6|CAB03269.1|  332|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z69792-3|CAA93666.1|  284|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U12965-4|AAA20608.1|  414|Caenorhabditis elegans Proteasome regu...    29   1.9  
Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr...    29   3.3  
L14745-11|AAA27919.2|  315|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical...    27   7.7  

>Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical
           protein C06H2.1 protein.
          Length = 191

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
 Frame = +3

Query: 39  AKRFTKPAINWVELEKRVPPEQKTNFFAFKGKVDSYLRRVLANPPEPPKINWDEYQKSVP 218
           AKR    ++NW +L +R+ PE        KG   ++   V   P + PKI++   +K++P
Sbjct: 5   AKRVATSSVNWSKLAERLVPEHAAELTRVKGVSGTFQSAVSQLPADLPKIDFAALKKALP 64

Query: 219 I-PGLVDKFKKEYEAFKVPF---PQDTLTSKVEEQWKEL-EPQIKAFCANLQKEIEASQK 383
               ++D  +K+YE+ K+P+   P + L  K  +QW +    +IK     +   ++ ++K
Sbjct: 65  AHSAVLDSLQKQYESVKIPYGEVPAEYL--KEVDQWVDYNNARIKLHEVKVADGLQEAKK 122

Query: 384 ELQRIKSLPKFEEMTMEMFYELYPDQALD 470
             ++    P  E    + F E +P    D
Sbjct: 123 VEEKWAKAPPVEHFDRQHFVEYFPAHFYD 151


>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
            protein F35D11.11a protein.
          Length = 1840

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +3

Query: 243  KKEYEAFKVPFPQDTLTS--KVEEQWKELEPQIKAFCANLQKEIEASQKELQRIK 401
            K E  + K+   Q+T+T+  K EE+WK LE +++A    L+KE      E++ +K
Sbjct: 1610 KNEELSSKLIVMQNTVTAMKKFEEEWKRLEAEMRAELKILRKEKLMQTAEIEDLK 1664


>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
            protein F35D11.11c protein.
          Length = 1898

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +3

Query: 243  KKEYEAFKVPFPQDTLTS--KVEEQWKELEPQIKAFCANLQKEIEASQKELQRIK 401
            K E  + K+   Q+T+T+  K EE+WK LE +++A    L+KE      E++ +K
Sbjct: 1610 KNEELSSKLIVMQNTVTAMKKFEEEWKRLEAEMRAELKILRKEKLMQTAEIEDLK 1664


>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
            protein F35D11.11d protein.
          Length = 1671

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +3

Query: 243  KKEYEAFKVPFPQDTLTS--KVEEQWKELEPQIKAFCANLQKEIEASQKELQRIK 401
            K E  + K+   Q+T+T+  K EE+WK LE +++A    L+KE      E++ +K
Sbjct: 1370 KNEELSSKLIVMQNTVTAMKKFEEEWKRLEAEMRAELKILRKEKLMQTAEIEDLK 1424


>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
            protein F35D11.11b protein.
          Length = 1911

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +3

Query: 243  KKEYEAFKVPFPQDTLTS--KVEEQWKELEPQIKAFCANLQKEIEASQKELQRIK 401
            K E  + K+   Q+T+T+  K EE+WK LE +++A    L+KE      E++ +K
Sbjct: 1610 KNEELSSKLIVMQNTVTAMKKFEEEWKRLEAEMRAELKILRKEKLMQTAEIEDLK 1664


>AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical
           protein M57.2 protein.
          Length = 580

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +3

Query: 138 DSYLRRVLANPPEPPKINWDEYQKSVPIPGLVDKFKKEYEAFKVPFPQDTLTSKVEE--Q 311
           D+ LR V +NP +   I+W E  +  P   L D+ K  Y+  +VP P   +   +E+  Q
Sbjct: 326 DTPLRVVTSNPTDLENISWTELNEQ-PYVNL-DRLKTIYDVVEVPQPA-YIGELLEDCKQ 382

Query: 312 WKELEPQIK 338
             ELEP+ K
Sbjct: 383 LIELEPKNK 391


>Z81111-6|CAB03269.1|  332|Caenorhabditis elegans Hypothetical
           protein T01G5.7 protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/69 (24%), Positives = 37/69 (53%)
 Frame = +3

Query: 228 LVDKFKKEYEAFKVPFPQDTLTSKVEEQWKELEPQIKAFCANLQKEIEASQKELQRIKSL 407
           L+ K  K++EA  +PF +DT+ + +E+  +  +    AF    ++  + +  E Q+ K +
Sbjct: 35  LISKLMKKHEA-NIPFIEDTMATDIEKVLETNQKLQLAFAELDEQSEKINSLETQQHKLV 93

Query: 408 PKFEEMTME 434
            +  +M +E
Sbjct: 94  AELSKMEIE 102


>Z69792-3|CAA93666.1|  284|Caenorhabditis elegans Hypothetical
           protein F40E10.5 protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 297 KVEEQWKELEPQIKAFCANLQKEIEASQKEL 389
           K  E+WKEL    K F A L KEI    K++
Sbjct: 172 KAFEEWKELRLNEKKFLAGLSKEIRDELKKM 202


>U12965-4|AAA20608.1|  414|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 3 protein.
          Length = 414

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +3

Query: 321 LEPQIKAFCANLQKEIEASQKELQRIKSLP 410
           +E  IK    NL+KE+  +Q+E++RI+S+P
Sbjct: 53  MEDYIKLETRNLEKELLHAQEEVKRIQSVP 82


>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
           protein F27D4.6 protein.
          Length = 1008

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 357 QKEIEASQKELQRIKSLPKFEEMTMEMFYELYPDQALDPVNKPTFWPHTPEEQGVSPEKT 536
           +K  E  Q++L+    +PK +E   E             +NKP+  PHT     +SP  +
Sbjct: 319 KKRFETEQEQLK--VQVPKVDEKPTESSIPTKTSNVTSQLNKPSPSPHTQRVPLLSPLAS 376

Query: 537 STK 545
           +T+
Sbjct: 377 ATR 379


>L14745-11|AAA27919.2|  315|Caenorhabditis elegans Hypothetical
           protein C02F5.4 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 38/163 (23%), Positives = 61/163 (37%), Gaps = 17/163 (10%)
 Frame = +3

Query: 48  FTKPAINWVELEKRVPPEQKTNFFAFKGKVDSYLR-RVLANPPEPPK---INWDEYQKSV 215
           F  PA+   E  K   P Q     A K   D  L  + L NPP   +       +Y  ++
Sbjct: 140 FPTPAVANKEHGKVAQPSQFVVEEAKKNAQDVLLSLKRLQNPPSTEREIRTELSKYPDNI 199

Query: 216 PIPGLVDKFKKEYEAFKVPFPQDTLTSKVEEQWKEL----------EPQIKAFCANLQKE 365
             P  +   +   EA  +    +     +EE  K L          E  +     N++  
Sbjct: 200 SCPEKLQSVRSSQEAQSLLVQNEEALPMLEEYVKRLKNETNERETLESNLNMLIENVRMS 259

Query: 366 IEASQK---ELQRIKSLPKFEEMTMEMFYELYPDQALDPVNKP 485
           IE  +K   E++R +   K + + +E  +E  PD A +  N P
Sbjct: 260 IEHHEKLCREVKRREDRIKADLLEVEKTFESLPDLAAEMPNAP 302


>Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC376.8 protein.
          Length = 278

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/85 (27%), Positives = 38/85 (44%)
 Frame = +3

Query: 168 PPEPPKINWDEYQKSVPIPGLVDKFKKEYEAFKVPFPQDTLTSKVEEQWKELEPQIKAFC 347
           PP PP     E  K+ P    V K +++ E  K   P++   SK  E+ ++ + +     
Sbjct: 53  PPPPPAPKVPEPPKAPPPADAVKKIEEKGEEKK---PEEPAKSKKSEKKEKSKNEGSKKE 109

Query: 348 ANLQKEIEASQKELQRIKSLPKFEE 422
            + +KE E S K   +    PK E+
Sbjct: 110 EDKEKEKEKSNKAEDKKSEDPKKED 134


>AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical
           protein Y73E7A.8 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 156 VLANPPEPPKINWDEYQKSVPIPGLVDKFKKE-YEAFKVPFPQDTLTSKV 302
           +L  PP P  IN D+Y         VD ++++  EA K  +P +T+  K+
Sbjct: 107 ILGRPPRPNTINPDDYDS-------VDPWQEDRVEALKQLYPDETIDEKL 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,607,846
Number of Sequences: 27780
Number of extensions: 283141
Number of successful extensions: 1058
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)