Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19g24
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    28   0.96 
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    28   1.3  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    28   1.3  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.7  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   2.2  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   3.9  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    26   5.1  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    26   5.1  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   6.8  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +1

Query: 370 DPKQGKSLDIIMKKMKHRLVENMSSG--AADA-LGLSRAILCNDTLVAKLDELRETENTY 540
           DPK+ K L     +++HR+ E    G   A+A + L +A   N+  ++  D L    N Y
Sbjct: 69  DPKEAKELVFREVQLRHRINEFRKKGYFTAEAPVELKKAPSSNNIPISYRDNLLSHVNGY 128

Query: 541 KRLVEHSKRMLKS 579
            R + + +++  S
Sbjct: 129 ARSMHNDRKVRAS 141


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
 Frame = +1

Query: 277 QSVKGKTKVEVAKMIQSAK---DEVTINYNKLHADPKQGKSLDIIMKKMKHRLVENMSSG 447
           Q ++GK K E+  +++  +   DEV   Y K   D  Q  S D    K +  L+ ++++G
Sbjct: 333 QQIRGKAK-ELETLLRGKRKRLDEVLSVYEK-RKDEHQSISKDF---KSQEELISSLTTG 387

Query: 448 AADALGLSRAILCNDTLVAKLDELRETENTYKRLVEHSKRMLKSYFDLLQLTK 606
            +   G             KL E R+T N +K   E ++  L+     + LTK
Sbjct: 388 LSTTEGHETGYS------RKLHEARDTLNDFKAEKETNRLKLEGLNKQISLTK 434


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 209 STTLQHPRKAPCRAVTSWSVSMGSP*KEKPKLRSR 313
           STT  HP K P RA  S    + S  K  P + ++
Sbjct: 310 STTANHPEKTPSRAAASLLSILDSKEKNTPSITAK 344


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -2

Query: 350 FIVTSSLADCIIFATSTLVFPFTDCPLTPTSSSPLCR----VPSLDAGVLSNI 204
           F+  + LA+  +F T    F  + CP +   +S +CR    + SLD G  ++I
Sbjct: 67  FLTIAGLAESELFDTLNPAFRISSCPSSNAFASLMCRYERQLDSLDNGKTTDI 119


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 258  LVTALQGAFLGCWSVVEYLYDVKAWTQWSSTTDADTY 148
            L + L  A   C S+   L D+  W +W++  D +TY
Sbjct: 1035 LDSGLDSALKICKSLSVGLLDISNWDEWNNYFDLNTY 1071


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
 Frame = +1

Query: 244 QSGDELVGVNGQSVKGKTKVEVAKMIQSAKDEVTINYNKLHADPKQGKSLDIIMKKMKHR 423
           Q  DE+   N   ++G     + + ++  +DE+    N  +    + + L+  + K+   
Sbjct: 498 QEADEVELSNNYDLQGAAVQYLQRRLRMVEDELHEAINSKNVQQSRSEELEQQISKLTDN 557

Query: 424 LVENMSSGAADALGLSRAILCNDTL-VAKLDELRETENTYKRLVEHSKR 567
           L E  ++     L L ++   N+ L   +++++ E  N  K L   +K+
Sbjct: 558 LQEYRNTVRELKLDLEKSKKKNEDLSKLEVEKVEEIANLKKELTHLAKQ 606


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 64  DDFLFEEDKMGMIVTSGSVVLSKDEKNLIGISI 162
           D F FE DK   +  + SVVL   ++  I  SI
Sbjct: 111 DQFSFENDKTSFVAKNCSVVLEDQKRYRIRASI 143


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 223 ASKEGT-LQSGDELVGVNGQSVKGKTKVEVAKMIQSAKDEVTINYNKLHAD 372
           A+  GT + SGD   G+   + KG   VE  K  QS       +Y++ H D
Sbjct: 58  ANDMGTDIGSGDPYAGMTSDTKKGFNSVESRKKEQSDVRGGDTSYSRRHDD 108


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 290 PFTDCP-LTPTSSSPLCRVPSLDAGVLSN 207
           PFT    L+P+S  PL ++P+LD  V S+
Sbjct: 178 PFTPSDRLSPSSLVPLLKLPALDHAVSSS 206


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = -1

Query: 216 VVEYLYDVKAWTQWSSTTDADTYQVLFIFTQHDATRRHDHT 94
           +++ L+ V+A T+ S    + +YQ++  FT+ ++ R  + T
Sbjct: 437 ILQDLFTVRALTRHSKNNRSISYQIIGFFTRLNSIRPVEFT 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,515
Number of Sequences: 5004
Number of extensions: 57717
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)