Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19g24
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0161 + 27108920-27109279,27109479-27109598,27110301-271104... 40 0.002
05_01_0025 - 171012-171263,171361-171450,171536-171592,171907-17... 31 0.99
01_01_0085 - 639959-640192,640290-640379,640465-640521,640826-64... 31 0.99
06_02_0135 + 12188739-12189086,12189191-12189272,12189397-121895... 30 1.3
05_06_0038 - 25100851-25101474,25101945-25102058,25102151-251024... 30 1.7
05_07_0165 + 28107093-28108457 29 4.0
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654... 29 4.0
02_05_0361 + 28285994-28286063,28286341-28286393,28286528-282865... 28 5.3
11_01_0150 + 1256029-1256137,1256206-1256247,1256345-1256455,125... 27 9.2
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407... 27 9.2
>01_06_0161 +
27108920-27109279,27109479-27109598,27110301-27110438,
27110680-27110784,27110883-27111051,27111507-27111583,
27111796-27111840,27111984-27112022,27112374-27112457,
27112846-27112884,27112963-27113025,27113109-27113238,
27113319-27113374
Length = 474
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 190 LYIVQIFDNTPASKEGTLQSGDELVGVNGQSVKGKTKVEVAKMIQSAKDE-VTINYNKLH 366
L ++ + + PA G Q GDEL+ VNG V GK+ +V+ M+Q KD VTI +
Sbjct: 188 LMVLGLILDGPAHSAGVRQ-GDELLSVNGIDVMGKSAFDVSSMLQGPKDTFVTIKVKHGN 246
Query: 367 ADP 375
P
Sbjct: 247 CGP 249
>05_01_0025 -
171012-171263,171361-171450,171536-171592,171907-171939,
172050-172124,172219-172308,172421-172522,172725-172795,
173326-173479,173587-173663,174183-174219
Length = 345
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/75 (21%), Positives = 43/75 (57%)
Frame = +1
Query: 304 EVAKMIQSAKDEVTINYNKLHADPKQGKSLDIIMKKMKHRLVENMSSGAADALGLSRAIL 483
E ++I+ +DEVT+ + L A + +S++++++ ++ +LV ++ A + AI
Sbjct: 166 ETQEIIEGTRDEVTVIHGDLSAFQEDLQSVNLVVRSLESKLV-SLEYTQVPAASVPPAIG 224
Query: 484 CNDTLVAKLDELRET 528
++ +V ++ L ++
Sbjct: 225 SSERVVRRVSSLPQS 239
>01_01_0085 -
639959-640192,640290-640379,640465-640521,640826-640858,
640972-641046,641141-641230,641343-641444,641643-641713,
642243-642396,642497-642573,643077-643113
Length = 339
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/75 (21%), Positives = 43/75 (57%)
Frame = +1
Query: 304 EVAKMIQSAKDEVTINYNKLHADPKQGKSLDIIMKKMKHRLVENMSSGAADALGLSRAIL 483
E ++I+ +DEVT+ + L A + +S++++++ ++ +LV ++ A + AI
Sbjct: 166 ETQEIIEGTRDEVTVIHGDLSAFQEDLQSVNLVVRSLESKLV-SLEYTQVPAASVPPAIG 224
Query: 484 CNDTLVAKLDELRET 528
++ +V ++ L ++
Sbjct: 225 SSELVVRRVSSLPQS 239
>06_02_0135 +
12188739-12189086,12189191-12189272,12189397-12189527,
12189626-12189712,12189794-12189872,12190520-12190608,
12190765-12190806,12191030-12191149,12191819-12191968,
12192066-12192137,12192293-12192541
Length = 482
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 190 LYIVQIFDNTPASKEGTLQSGDELVGVNGQSVKG 291
L ++ + PA + G L GDELV ++G+SV G
Sbjct: 216 LLVMDCIEGGPADRAG-LHGGDELVEIDGKSVSG 248
>05_06_0038 -
25100851-25101474,25101945-25102058,25102151-25102441,
25102552-25102860,25103458-25104186
Length = 688
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 449 APEDMFSTNLCFIFFMI--ISRLFPCLGSAW 363
AP F TN C FM+ I RL CLG W
Sbjct: 172 APPLQFLTNACVALFMVQSIDRLVLCLGCFW 202
>05_07_0165 + 28107093-28108457
Length = 454
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = -2
Query: 296 VFPFTDCPLTPTSSS-----PLCRVPSLDAGVLSNIC 201
VFP ++PTSS+ P+CRV ++ ++NIC
Sbjct: 73 VFPVEPAAVSPTSSTRTATAPICRVNHMEGYRIANIC 109
>03_05_0822 -
27963849-27964544,27965043-27965091,27965372-27965480,
27965979-27966006,27966086-27966276,27966418-27966532,
27966955-27967206
Length = 479
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 52 QEYEDDFLFEEDKMGMIVTSGSVVLSKDEKNLIGISIGGGAPLCP 186
++ +DD EE + G + S DE G S GG PLCP
Sbjct: 429 RDTDDDDEVEEKRPRRRTADGLAIYSADELGF-GKSDAGGTPLCP 472
>02_05_0361 +
28285994-28286063,28286341-28286393,28286528-28286588,
28286825-28287912
Length = 423
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 354 IVYCYFILGRLYHFRDLNFGFSFYGLPIDTDQLVTALQGAFLGCWS 217
I Y +LG + DL + + LP+ T L+ A Q AF +S
Sbjct: 163 ITLIYVVLGLIIAADDLMYSYGLLYLPVSTYSLICASQLAFNAVFS 208
>11_01_0150 +
1256029-1256137,1256206-1256247,1256345-1256455,
1256538-1256600,1256678-1256910,1256999-1257223,
1257319-1257411,1257493-1257591,1257840-1257956
Length = 363
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 226 SKEGTLQSGDELVGVNGQSVKGKTKVEVAKMIQSAKDEVTINYNK 360
S GTLQ+G ++V G+ K K K EVAK+ ++ K +V N+
Sbjct: 101 SLNGTLQNGTKMVQHKGRG-KNKCK-EVAKLKENQKIKVEFYNNR 143
>07_03_1704 + 28839628-28839908,28840010-28840123,28840416-28840769,
28841072-28841268,28841496-28841587,28841700-28842027,
28842328-28842535,28843555-28843669,28844023-28844190,
28844804-28845476,28845552-28845758,28845911-28847001
Length = 1275
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 570 HSLRMLHESLVCILGFPQLVQFRYQRVI 487
H + ML L+C+ G P LVQ Y+ +
Sbjct: 1101 HQVAMLGGGLLCVAGGPLLVQVLYEETL 1128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,372,421
Number of Sequences: 37544
Number of extensions: 380714
Number of successful extensions: 1028
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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