Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19g24
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    25   0.60 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         25   0.60 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   5.6  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   5.6  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 262 VGVNGQSVKGKTKVEVAKMIQSAKDEVTINYNKLH---ADPKQGKSLDIIMKKMKHRLVE 432
           +G+       +T +E+ K I+ AK++V     K H    +P  G +L    +   +R++ 
Sbjct: 148 IGIGDTIADPQTYLEIQKXIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILN 207

Query: 433 N 435
           +
Sbjct: 208 D 208


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 449 PLMPLDYRGLYCAMTRW*RNWTS 517
           PL+PL +R + C +  W   W S
Sbjct: 53  PLLPLRHRRVTCDVLSWQSKWLS 75


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 272 LTPTSSSPLCRVPSLD 225
           LTP SS+P+  VPS D
Sbjct: 435 LTPPSSNPVSPVPSPD 450


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 307 VAKMIQSAKDEVTINYNKLH 366
           V  M+  +K+ VT+N  KLH
Sbjct: 507 VIVMMNFSKNPVTVNLTKLH 526


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 25/112 (22%), Positives = 47/112 (41%)
 Frame = +1

Query: 43  KMMQEYEDDFLFEEDKMGMIVTSGSVVLSKDEKNLIGISIGGGAPLCPCLYIVQIFDNTP 222
           KM+ EYE   + E +K+G   +      S+D  N   IS             V + D   
Sbjct: 59  KMILEYELRRIREIEKLGSERSKSRSPDSRDRSNTSNIS-----------KTVILSDKLE 107

Query: 223 ASKEGTLQSGDELVGVNGQSVKGKTKVEVAKMIQSAKDEVTINYNKLHADPK 378
           +S + +L  G E + +N   ++ K K+E+ + +       T+   +   +P+
Sbjct: 108 SSDDISLFRGPEGIQINATELQ-KIKLEIHRDLPGKSTTTTVEVKRDIINPE 158


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 359 LL*FIVTSSLADCIIFATSTLVFPFTDCPLTP 264
           LL  IV +S+  C++  T+  +    +C  TP
Sbjct: 2   LLYHIVGASVLICLLNETAKAIIGVDECQATP 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.134    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,304
Number of Sequences: 438
Number of extensions: 4030
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)