Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19g23
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    29   0.75 
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    28   1.3  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   1.7  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    25   9.3  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 352 EDVLKFL---NSSPEYNGLKEQLPTSLLRKYKAPESMYLINRKTASIIANTV 498
           +D + FL   N  P+ NGL   +  S LR ++A  S+  +   T S+  NT+
Sbjct: 401 KDAIYFLENYNYIPDSNGLNHSIRVSALRYWRACVSILALMDDTVSLEPNTI 452


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 515 WVK*LFTVFAIILAVFLFIKY 453
           W+K LF ++A++LAVF  I +
Sbjct: 339 WIKFLFVMYAVVLAVFFGIMH 359


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 298 IRMRHKLNKLSEKQPKLAEDVLKFLNSSP---EYNGLKEQLPTSLLRKYKAPE 447
           +  RH LNKLS+ +    E+ +  L+ +P    Y   K++  +S   KY+ P+
Sbjct: 171 VENRHPLNKLSKTKTLAYEETINQLDETPGGTNYPMNKKKTLSSETNKYEYPQ 223


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 500 FTVFAIILAVFLFIKYILSGALYFLSNDVGS 408
           F    I++    FI   + G +YFL NDV S
Sbjct: 27  FPSSGILITFSQFILITIEGLIYFLLNDVQS 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,240
Number of Sequences: 5004
Number of extensions: 41199
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)