Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19g23
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306     28   7.2  
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171...    28   7.2  

>10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306
          Length = 387

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 280 NFIAIHIRMRHKLNKLSEKQPKLAEDVLKFLNSSPEYNGLKEQLPTSLLRK 432
           +F  +H+    ++N+  E      E +   L+SSP+   LK+ L T+L+++
Sbjct: 221 SFAPVHVVPAVQVNEAFEVARNSVELLSTVLSSSPQKEALKDDLTTTLVQQ 271


>05_03_0682 -
           16916437-16916686,16916761-16916822,16917082-16917147,
           16917606-16917737,16917925-16918026,16918146-16918343,
           16918409-16918555,16918804-16918914,16919661-16920194,
           16920269-16920425,16920511-16920660,16920744-16920883,
           16921668-16921784,16922759-16922932,16923020-16923187,
           16923323-16923464,16923610-16923728,16924997-16925098,
           16925618-16925701,16926843-16927142
          Length = 1084

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/58 (20%), Positives = 28/58 (48%)
 Frame = -2

Query: 185 KKITIFRNLNIIHF*NYCSSIYFSWKSNASIHTSNIKCMSFKGINIRYGHLQRSQHKI 12
           K + I  N+ ++ + ++ SS  + W  +  I   + +     G+++ +G    S HK+
Sbjct: 425 KLLNIHENVKVLRYPDHFSSGVYLWSHHEKIVIVDNQVCYLGGLDLCFGRYDNSAHKL 482


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,611,701
Number of Sequences: 37544
Number of extensions: 200050
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)