Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19g23
         (642 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY508412-1|AAS91579.1|  452|Drosophila melanogaster mitochondria...    36   0.062
AY060616-1|AAL28164.1|  452|Drosophila melanogaster GH04071p pro...    36   0.062
AE014297-1076|AAF54482.2|  452|Drosophila melanogaster CG3910-PA...    36   0.062
AE013599-616|AAF59114.3| 4699|Drosophila melanogaster CG33087-PC...    29   7.1  
AE014296-2257|AAF49833.1| 1544|Drosophila melanogaster CG17687-P...    28   9.4  

>AY508412-1|AAS91579.1|  452|Drosophila melanogaster mitochondrial
           transcription factorB2 protein.
          Length = 452

 Score = 35.5 bits (78), Expect = 0.062
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
 Frame = +1

Query: 412 PTSLL-RKYKAPESMYLINRKTASIIANTVKSYFTQG--SPLIEVNPGLGILTENIL--K 576
           P  LL RK K P  MY+ N + A+ I   ++ +F       ++E+N G G  T ++L  +
Sbjct: 30  PEKLLNRKQKVPTHMYIANSEAAARINQYLEPHFQSSGCDTVMELNSGAGYFTRHLLDRE 89

Query: 577 CQNNKIYLFETV*SF 621
            Q  +I L E++  F
Sbjct: 90  SQFRRIILLESMDHF 104


>AY060616-1|AAL28164.1|  452|Drosophila melanogaster GH04071p
           protein.
          Length = 452

 Score = 35.5 bits (78), Expect = 0.062
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
 Frame = +1

Query: 412 PTSLL-RKYKAPESMYLINRKTASIIANTVKSYFTQG--SPLIEVNPGLGILTENIL--K 576
           P  LL RK K P  MY+ N + A+ I   ++ +F       ++E+N G G  T ++L  +
Sbjct: 30  PEKLLNRKQKVPTHMYIANSEAAARINQYLEPHFQSSGCDTVMELNSGAGYFTRHLLDRE 89

Query: 577 CQNNKIYLFETV*SF 621
            Q  +I L E++  F
Sbjct: 90  SQFRRIILLESMDHF 104


>AE014297-1076|AAF54482.2|  452|Drosophila melanogaster CG3910-PA
           protein.
          Length = 452

 Score = 35.5 bits (78), Expect = 0.062
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
 Frame = +1

Query: 412 PTSLL-RKYKAPESMYLINRKTASIIANTVKSYFTQG--SPLIEVNPGLGILTENIL--K 576
           P  LL RK K P  MY+ N + A+ I   ++ +F       ++E+N G G  T ++L  +
Sbjct: 30  PEKLLNRKQKVPTHMYIANSEAAARINQYLEPHFQSSGCDTVMELNSGAGYFTRHLLDRE 89

Query: 577 CQNNKIYLFETV*SF 621
            Q  +I L E++  F
Sbjct: 90  SQFRRIILLESMDHF 104


>AE013599-616|AAF59114.3| 4699|Drosophila melanogaster CG33087-PC
            protein.
          Length = 4699

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 503  LFTVFAIILAVFLFIKYILSGALYFL 426
            +F+V  ++LAV L +  + +GA+YFL
Sbjct: 4581 VFSVVVLVLAVILLVFALFAGAVYFL 4606


>AE014296-2257|AAF49833.1| 1544|Drosophila melanogaster CG17687-PA
            protein.
          Length = 1544

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
 Frame = +1

Query: 232  LTMIGKSFFRLHCKRCNFIAIHIRMRHKLN-KLSEKQP-KLAEDVLKFLNSSPEYNGLKE 405
            +T + K   +L  K  N + I +   +KL+ K S + P  L +DVL+FLN   E++  K+
Sbjct: 1162 MTKLFKKRPKLPGKVFNSVLICMEASNKLSGKPSHRTPFPLPDDVLEFLNYLAEFDQPKQ 1221

Query: 406  QLPTSLLRKYKAPESMYLINRKTASIIANTVKSYFTQGSPLIEVNPGLGILTENILKCQN 585
              P    + + A   + L  +KT S +   +K     G  L++    LG+L +++   + 
Sbjct: 1222 CPPNVDPKSWDA--FVKLRRQKTESEL--RLKGI---GYQLLDSQALLGVLNKDLAALKE 1274

Query: 586  NKI 594
            +KI
Sbjct: 1275 SKI 1277


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,299,068
Number of Sequences: 53049
Number of extensions: 380641
Number of successful extensions: 898
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)