Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19g22
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   1.3  
SPCC18B5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   1.7  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    26   2.9  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    26   3.8  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   5.1  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   5.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.7  
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    25   8.9  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 225 ELCALAIHDLTKHMAFSEHEMVREQRIRNIALRS 124
           E  A  IHDL +  +F +HE++R +  R  A+++
Sbjct: 216 EKSACEIHDLKESDSFKDHEILRLKEERTAAMQA 249


>SPCC18B5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 116

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 413 LILAGKD-LRSFLNYTNPLYKDKLYTQHQQAFRVYMS*LLWVKTLNAVRRRFY 258
           LI+  KD +R++L +++P          Q+A + Y+  L W   LNA+ + FY
Sbjct: 49  LIITWKDSMRAYLTFSSP----------QEAQKAYLDSLRWGSQLNAIIKPFY 91


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 210 QGHIIRGWFNEAVIYPVKTTPYRIQCLYP 296
           +GH+I       V+YP+ +T  RI   YP
Sbjct: 203 RGHVILSKVAPMVLYPISSTEARILINYP 231


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/72 (22%), Positives = 29/72 (40%)
 Frame = +2

Query: 62  GTFSYRKYGEDPLNSKVIFNSDRKAIFRMRCSLTISCSENAMCFVRSWMARAHNSWLVQR 241
           GT    +  +D  +  V F+SD+K  +  +    + C+E      R  +     +     
Sbjct: 119 GTLPSTRVSKDSKDDNVSFSSDKKQFYVKKEPFPVPCTEPTTSGDRYTVRMKAPTPKYST 178

Query: 242 GCYLPSKNDALP 277
             +LPSK +  P
Sbjct: 179 DNHLPSKKELFP 190


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 429 SDTLSTNSSW*GFTEFPELHQSALQRQTLYSASASLS 319
           + +L T+S+   FT+F  L  S L  +   SAS+SLS
Sbjct: 495 NSSLVTSST--SFTKFSSLSSSQLSTENFTSASSSLS 529


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 246 QPR*TNHELCALAIHDLTKHMAFSEHEMVREQ 151
           QP    HEL AL  H+     A  ++E+ R+Q
Sbjct: 313 QPPQPEHELAALQEHNEAHDAAMRQYELERQQ 344


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 312  HVIALVGKDIECGK 271
            H+IAL+ K + CGK
Sbjct: 2099 HIIALIDKSLRCGK 2112


>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/68 (17%), Positives = 31/68 (45%)
 Frame = +2

Query: 5   IVINILETIVLTKSLLCFNGTFSYRKYGEDPLNSKVIFNSDRKAIFRMRCSLTISCSENA 184
           + + +LE++ + +  + +  T       +   N  +I ++DRK+  R+R ++        
Sbjct: 166 VQVFVLESVNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKSQM 225

Query: 185 MCFVRSWM 208
           + F   W+
Sbjct: 226 VWFRYGWI 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,126
Number of Sequences: 5004
Number of extensions: 40336
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)