Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19g22
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   10.0 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   10.0 

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 210 QGHIIRGWFNEAVIYPVKTTPY 275
           QGH  R   + AVI P K +P+
Sbjct: 595 QGHSARRSGDVAVIVPPKISPF 616


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 213 GHIIRGWFNEAVIYPVKTTP 272
           G +  GWFN++      T+P
Sbjct: 62  GGVELGWFNDSAAAITSTSP 81


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 38  TKSLLCFNGTFSYRKYGEDPLNSKVIFNS 124
           T S++C NG    R+   +  N++ + +S
Sbjct: 291 TNSMICLNGQVLKRESIHNSSNARFLMDS 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,183
Number of Sequences: 438
Number of extensions: 2847
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)