Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19g20
         (658 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK027876-1|BAB55424.1|  488|Homo sapiens protein ( Homo sapiens ...    33   1.2  
AF220144-1|AAG53517.1|  243|Homo sapiens tripartite motif protei...    33   1.2  
AF220143-1|AAG53516.1|  488|Homo sapiens tripartite motif protei...    33   1.2  
AB039903-1|BAB17050.1|  842|Homo sapiens interferon-responsive f...    33   1.2  
AB039902-1|BAB17049.1|  488|Homo sapiens interferon-responsive f...    33   1.2  
AL583914-1|CAC29498.1|  410|Homo sapiens hypothetical protein pr...    32   2.1  
BC028703-1|AAH28703.1|  383|Homo sapiens LASS3 protein protein.        30   8.3  

>AK027876-1|BAB55424.1|  488|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14970 fis, clone THYRO1000501, weakly similar to
           52 KD RO PROTEIN. ).
          Length = 488

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
 Frame = +3

Query: 9   NLHLNLLLCEFVMIFVFHILVFTIFLIEIHNFSIQGTKHFSNGNETRRVVISEDVSEMIP 188
           NL+LNL+L E        ++   I+  + +N+ + G+++FS+G     V +S+  + ++ 
Sbjct: 309 NLNLNLVLSEDQR----QVISVPIWPFQCYNYGVLGSQYFSSGKHYWEVDVSKKTAWILG 364

Query: 189 DFFFKHNSHRKLTTNYTNHRKPNLKSN---VFDKMLSDEMLSMKQQSHEKDMTYSPSILT 359
            +   ++ H K       +R+ NL +    +F   +       K    E+ ++  P +LT
Sbjct: 365 VYCRTYSRHMKYVVRRCANRQ-NLYTKYRPLFGYWVIGLQNKCKYGVFEESLSSDPEVLT 423

Query: 360 WNKASIP 380
            + A  P
Sbjct: 424 LSMAVPP 430


>AF220144-1|AAG53517.1|  243|Homo sapiens tripartite motif protein
           TRIM34 epsilon protein.
          Length = 243

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
 Frame = +3

Query: 9   NLHLNLLLCEFVMIFVFHILVFTIFLIEIHNFSIQGTKHFSNGNETRRVVISEDVSEMIP 188
           NL+LNL+L E        ++   I+  + +N+ + G+++FS+G     V +S+  + ++ 
Sbjct: 64  NLNLNLVLSEDQR----QVISVPIWPFQCYNYGVLGSQYFSSGKHYWEVDVSKKTAWILG 119

Query: 189 DFFFKHNSHRKLTTNYTNHRKPNLKSN---VFDKMLSDEMLSMKQQSHEKDMTYSPSILT 359
            +   ++ H K       +R+ NL +    +F   +       K    E+ ++  P +LT
Sbjct: 120 VYCRTYSRHMKYVVRRCANRQ-NLYTKYRPLFGYWVIGLQNKCKYGVFEESLSSDPEVLT 178

Query: 360 WNKASIP 380
            + A  P
Sbjct: 179 LSMAVPP 185


>AF220143-1|AAG53516.1|  488|Homo sapiens tripartite motif protein
           TRIM34 alpha protein.
          Length = 488

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
 Frame = +3

Query: 9   NLHLNLLLCEFVMIFVFHILVFTIFLIEIHNFSIQGTKHFSNGNETRRVVISEDVSEMIP 188
           NL+LNL+L E        ++   I+  + +N+ + G+++FS+G     V +S+  + ++ 
Sbjct: 309 NLNLNLVLSEDQR----QVISVPIWPFQCYNYGVLGSQYFSSGKHYWEVDVSKKTAWILG 364

Query: 189 DFFFKHNSHRKLTTNYTNHRKPNLKSN---VFDKMLSDEMLSMKQQSHEKDMTYSPSILT 359
            +   ++ H K       +R+ NL +    +F   +       K    E+ ++  P +LT
Sbjct: 365 VYCRTYSRHMKYVVRRCANRQ-NLYTKYRPLFGYWVIGLQNKCKYGVFEESLSSDPEVLT 423

Query: 360 WNKASIP 380
            + A  P
Sbjct: 424 LSMAVPP 430


>AB039903-1|BAB17050.1|  842|Homo sapiens interferon-responsive finger
            protein 1 long form protein.
          Length = 842

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
 Frame = +3

Query: 9    NLHLNLLLCEFVMIFVFHILVFTIFLIEIHNFSIQGTKHFSNGNETRRVVISEDVSEMIP 188
            NL+LNL+L E        ++   I+  + +N+ + G+++FS+G     V +S+  + ++ 
Sbjct: 663  NLNLNLVLSEDQR----QVISVPIWPFQCYNYGVLGSQYFSSGKHYWEVDVSKKTAWILG 718

Query: 189  DFFFKHNSHRKLTTNYTNHRKPNLKSN---VFDKMLSDEMLSMKQQSHEKDMTYSPSILT 359
             +   ++ H K       +R+ NL +    +F   +       K    E+ ++  P +LT
Sbjct: 719  VYCRTYSRHMKYVVRRCANRQ-NLYTKYRPLFGYWVIGLQNKCKYGVFEESLSSDPEVLT 777

Query: 360  WNKASIP 380
             + A  P
Sbjct: 778  LSMAVPP 784


>AB039902-1|BAB17049.1|  488|Homo sapiens interferon-responsive
           finger protein 1 middle form protein.
          Length = 488

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
 Frame = +3

Query: 9   NLHLNLLLCEFVMIFVFHILVFTIFLIEIHNFSIQGTKHFSNGNETRRVVISEDVSEMIP 188
           NL+LNL+L E        ++   I+  + +N+ + G+++FS+G     V +S+  + ++ 
Sbjct: 309 NLNLNLVLSEDQR----QVISVPIWPFQCYNYGVLGSQYFSSGKHYWEVDVSKKTAWILG 364

Query: 189 DFFFKHNSHRKLTTNYTNHRKPNLKSN---VFDKMLSDEMLSMKQQSHEKDMTYSPSILT 359
            +   ++ H K       +R+ NL +    +F   +       K    E+ ++  P +LT
Sbjct: 365 VYCRTYSRHMKYVVRRCANRQ-NLYTKYRPLFGYWVIGLQNKCKYGVFEESLSSDPEVLT 423

Query: 360 WNKASIP 380
            + A  P
Sbjct: 424 LSMAVPP 430


>AL583914-1|CAC29498.1|  410|Homo sapiens hypothetical protein
           protein.
          Length = 410

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
 Frame = +3

Query: 9   NLHLNLLLCEFVMIFVFHILVFTIFLIEIHNFSIQGTKHFSNGNETRRVVISEDVSEMIP 188
           NL+LNL+L E        ++   I+  + +N+ + G+++FS+G     V +S+  + ++ 
Sbjct: 231 NLNLNLVLSEDQR----QVISVPIWPFQCYNYGVLGSQYFSSGKYYWEVDVSKKTAWILG 286

Query: 189 DFFFKHNSHRKLTTNYTNHRKPNLKSN---VFDKMLSDEMLSMKQQSHEKDMTYSPSILT 359
            +   ++ H K       +R+ NL +    +F   +       K    E+ ++  P +LT
Sbjct: 287 VYCRTYSRHMKYVVRRCANRQ-NLYTKYRPLFGYWVIGLQNKCKYGVFEESLSSDPEVLT 345

Query: 360 WNKASIP 380
            + A  P
Sbjct: 346 LSMAVPP 352


>BC028703-1|AAH28703.1|  383|Homo sapiens LASS3 protein protein.
          Length = 383

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -1

Query: 535 NTLFSEFSTKVFPTRL-VSP*ESLFCWLSFSLLPELARNSITGHFCFNSNVGVGILALFH 359
           NTLF  FST  F +RL V P   L+C L   +LP         +     N+ + IL + H
Sbjct: 261 NTLFFIFSTIFFISRLIVFPFWILYCTL---ILPMYHLEPFFSYIFL--NLQLMILQVLH 315

Query: 358 VRIEGLYVMSFS*DCCFIESI 296
            R  G Y++     C F++SI
Sbjct: 316 -RYWGYYILKMLNRCIFMKSI 335


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,273,440
Number of Sequences: 237096
Number of extensions: 1823868
Number of successful extensions: 3687
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3687
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)