Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19g15
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    44   2e-05
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    33   0.026
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    28   1.3  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    28   1.3  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    27   1.7  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    27   3.0  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    27   3.0  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    26   4.0  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   4.0  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    25   7.0  

>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
 Frame = +2

Query: 377 WSCYGLGELKLLSYKPEGTHLCRKIHHMYHCKEDDWGFAHFIAWDDLMNPDN----GFVK 544
           +SC     L L + +          HH +  +  DWGF  F+    +  P       F++
Sbjct: 135 YSCCAQFALSLSNVQDPTVMQINTSHHRFRSEVKDWGFTRFVDLRKIAVPTPEFPVPFLE 194

Query: 545 NDSITLEAHV-IAEAPHGVSW------DSKKHTGYVGL 637
           ND I +   V + + P GV W      +SKK TGYVGL
Sbjct: 195 NDEICISVTVRVLQDPTGVLWHSFVNYNSKKETGYVGL 232


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 33.5 bits (73), Expect = 0.026
 Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 11/159 (6%)
 Frame = +2

Query: 194 FRFIVQNVSELKEQVLSPACYVRCLPWKILVLVRNTTRNDHQPHKALGVFLQCNGECSSP 373
           F + +++  EL  + +SP   V    +KI    + T ++       L  ++    E  S 
Sbjct: 58  FTWHIKSWHELDRRAVSPQFAVGSRQFKITYFPQGTLQSAGFTSIFLE-YIPSEEEKLSN 116

Query: 374 GWSCYGLGELKLLSYKPEGTHLCRKIHHMYHCKEDDWGFAHFIAWDDLM---NPD-NGFV 541
            + C       + + +     +    H  +  +  DWGF  F     L+    PD    V
Sbjct: 117 KYGCCCQFAFVISNPRKPSLSVANSAHCRFSPEIVDWGFTQFAELKKLLCRQAPDVPPIV 176

Query: 542 KNDSITLEAHV-IAEAPHGVSW------DSKKHTGYVGL 637
           ++ ++ L A+V I + P GV W      DSK  TGYVGL
Sbjct: 177 EDGALLLTAYVRILKDPTGVLWHSFNDYDSKIATGYVGL 215


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +2

Query: 422 PEGTHLCR-KIHHMYHCKED--DWGFAHFIAWDDLMNPDN 532
           P+G HL    ++H Y   E   DW + HF++   L++ DN
Sbjct: 557 PDGDHLTLLNVYHAYKSGEGTADWCWNHFLSHRALISADN 596


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 89  AEMIEASSVDNATAPLPINHDFTPQDEDMARSE 187
           A MI   S ++      I +DFTP++E+  R E
Sbjct: 122 ANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKE 154


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 506 WDDLMNPDNGFVKNDSITLE 565
           W D+++PD  FVK  S+  E
Sbjct: 93  WSDILDPDADFVKQSSLAFE 112


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 184 GGHFPFYSSKCQRVERASAIP 246
           GG FP+  S+CQ +   S IP
Sbjct: 127 GGKFPYVFSECQAIHARSFIP 147


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -3

Query: 180 RAISSSCGVKS*LMGRGAVALSTLLASIISAANLISYFNLL 58
           + I S   V   L G   + L+T   S+I+A  LISYFNLL
Sbjct: 192 KLIDSKDFVLGFLAGLSVLLLNT--GSLITAKPLISYFNLL 230


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 208 NYKTESGLRTGHIFVLRCEVMING*RSRCIIDAACFNHLSSESYILLQFTVHY 50
           NYK + G    H+F LR  ++    +    I+ A   H S  + +   FTV++
Sbjct: 206 NYKAKDG----HLFFLRTGILWGFRKPILFIELASIQHFSYSNVLQRTFTVNF 254


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -1

Query: 479 RLLCNGTCDEFSCISAYPQAYRIGVLVRPIHNKTTQANCIR---RCTEGIRLKLCVVGDR 309
           ++L +   ++ SCI    +   IG L   I    ++   IR    C +GI  ++ +  D+
Sbjct: 34  KILHDSVGNKISCIGKSTKRIAIGTLDGRIVILNSRLQLIRDFYACEQGIVQQIYITADQ 93

Query: 308 FS*CCV 291
            + CCV
Sbjct: 94  SALCCV 99


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 86  AAEMIEASSVDNATAPLPINHDFTPQDEDMARSEATFRFIVQN 214
           A + + ASS+DN++ P     D     E++AR+  + + + QN
Sbjct: 133 AIDALRASSIDNSSDPAKFRSDL----ENIARTTLSSKILSQN 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,446
Number of Sequences: 5004
Number of extensions: 61558
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)