Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19g09
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   1.7  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         24   3.0  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    24   3.0  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    23   5.3  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    23   7.0  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    23   7.0  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    22   9.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    22   9.3  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 111 FFYWAYIFILLFTIIHSFYLRV 46
           FFYW + F   F+    F++ +
Sbjct: 74  FFYWFFFFFFFFSHCRRFHIAI 95


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 102 WAYIFILLFTIIHSFYLRVTC 40
           W +  +L FT +  FYL + C
Sbjct: 320 WIFTLLLTFTQLTIFYLSLNC 340


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 79  IHNHSQFLLACNM 41
           +H H+ F+LAC+M
Sbjct: 109 VHTHNLFMLACDM 121


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 112 FFLLGLHFYFVIHNHSQFLLACNMYVVDNMSGQS 11
           +F L ++  F+    SQ+++A  +Y+V  +S  S
Sbjct: 117 YFTLAINNNFIKGRRSQYVVASCLYIVCRISKTS 150


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 5/19 (26%), Positives = 13/19 (68%)
 Frame = -2

Query: 113 FFFIGLTFLFCYSQSFTVF 57
           + ++ ++F++C    FT+F
Sbjct: 143 YIYVAVSFIYCVMAFFTIF 161


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 15  CPDILSTTYMLHASK 59
           CPD L  TY+ HA +
Sbjct: 321 CPDFLIETYLDHAGE 335


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -1

Query: 108 FYWAYIFILLFTIIHSF 58
           F W+ +FI+ F+++ +F
Sbjct: 2   FSWSILFIVCFSLVSAF 18


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 1    TYSMTAPTYCLRRTCYTQVKTVND 72
            T S  AP + LRR+    VKT+ D
Sbjct: 1732 TVSQKAPNHLLRRSQDQNVKTMID 1755


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,431
Number of Sequences: 5004
Number of extensions: 5097
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)