Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19g07
(425 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47809-1|CAA87779.1| 370|Caenorhabditis elegans Hypothetical pr... 31 0.46
Z83123-5|CAB05611.1| 332|Caenorhabditis elegans Hypothetical pr... 28 3.2
AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related... 27 4.3
AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related... 27 4.3
Z81506-2|CAB04129.1| 257|Caenorhabditis elegans Hypothetical pr... 27 5.6
U32305-20|AAK18863.1| 796|Caenorhabditis elegans Worm armadillo... 27 5.6
AF013951-1|AAC47748.1| 796|Caenorhabditis elegans wrm-1 protein. 27 5.6
U61953-10|AAK82911.1| 613|Caenorhabditis elegans Hypothetical p... 26 9.8
U61953-9|AAK82910.1| 748|Caenorhabditis elegans Hypothetical pr... 26 9.8
U61953-8|AAC48078.1| 746|Caenorhabditis elegans Hypothetical pr... 26 9.8
>Z47809-1|CAA87779.1| 370|Caenorhabditis elegans Hypothetical
protein F42A8.1 protein.
Length = 370
Score = 30.7 bits (66), Expect = 0.46
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 276 KCTQKNTKVTQKKGVGRLHQDSVGRSGKE*RD*EYL 169
KC QK T V Q VG +H+ + G++ RD +YL
Sbjct: 171 KCQQKTTGVVQMCSVGCIHEGTRYTVGQQYRDGDYL 206
>Z83123-5|CAB05611.1| 332|Caenorhabditis elegans Hypothetical
protein T04A11.8 protein.
Length = 332
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/33 (30%), Positives = 24/33 (72%)
Frame = +2
Query: 275 FKKRRLFIETIILKKKNIIPYLICIIKIMNKLS 373
F+ R+F+ T++ KKK+ I + + I+ +++++S
Sbjct: 46 FRIFRIFLNTVLWKKKSPINHSVFIVLVLSQIS 78
>AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related
helicase protein.
Length = 1037
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 194 RSSGIESTFNFLVET--RCFCTFEEKHNFHNKVLVNSL 87
R +G + N ++ CFCT NFH +V +N L
Sbjct: 609 RETGTRTIINEALDVLKECFCTLSYNINFHPEVALNYL 646
>AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related
helicase protein 1 protein.
Length = 1037
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 194 RSSGIESTFNFLVET--RCFCTFEEKHNFHNKVLVNSL 87
R +G + N ++ CFCT NFH +V +N L
Sbjct: 609 RETGTRTIINEALDVLKECFCTLSYNINFHPEVALNYL 646
>Z81506-2|CAB04129.1| 257|Caenorhabditis elegans Hypothetical
protein F16H6.3 protein.
Length = 257
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 174 TLNPATPYLTFQLNPDVIYLHLSFVLLLCSFVC 272
T PA PYLT +NPD++ ++ C F C
Sbjct: 80 TRGPA-PYLTEPINPDLVVDGMATCPKTCGFCC 111
>U32305-20|AAK18863.1| 796|Caenorhabditis elegans Worm armadillo
protein 1 protein.
Length = 796
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 171 GTLNPATPYLTFQLNPDVIYLHLSFVLLLCS 263
GTLNP +LT +++ ++ L+F+L +CS
Sbjct: 697 GTLNPFQ-WLTHEMSDGILQEWLAFILSICS 726
>AF013951-1|AAC47748.1| 796|Caenorhabditis elegans wrm-1 protein.
Length = 796
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 171 GTLNPATPYLTFQLNPDVIYLHLSFVLLLCS 263
GTLNP +LT +++ ++ L+F+L +CS
Sbjct: 697 GTLNPFQ-WLTHEMSDGILQEWLAFILSICS 726
>U61953-10|AAK82911.1| 613|Caenorhabditis elegans Hypothetical
protein R08C7.10c protein.
Length = 613
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = -1
Query: 218 RIQLEGQVRSSGIESTFNFLVETRCFCTFEEKHNFHNKVLVNSLNTICYKPRLLVQN 48
+I+ + + + T++ L+ RCF E FH K N I ++ +L+ +
Sbjct: 411 KIETNVNLIADNADDTYSILILNRCFRILESSSVFHKK---NQAFLISHRSNILISS 464
>U61953-9|AAK82910.1| 748|Caenorhabditis elegans Hypothetical
protein R08C7.10b protein.
Length = 748
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = -1
Query: 218 RIQLEGQVRSSGIESTFNFLVETRCFCTFEEKHNFHNKVLVNSLNTICYKPRLLVQN 48
+I+ + + + T++ L+ RCF E FH K N I ++ +L+ +
Sbjct: 413 KIETNVNLIADNADDTYSILILNRCFRILESSSVFHKK---NQAFLISHRSNILISS 466
>U61953-8|AAC48078.1| 746|Caenorhabditis elegans Hypothetical
protein R08C7.10a protein.
Length = 746
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = -1
Query: 218 RIQLEGQVRSSGIESTFNFLVETRCFCTFEEKHNFHNKVLVNSLNTICYKPRLLVQN 48
+I+ + + + T++ L+ RCF E FH K N I ++ +L+ +
Sbjct: 411 KIETNVNLIADNADDTYSILILNRCFRILESSSVFHKK---NQAFLISHRSNILISS 464
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,158,861
Number of Sequences: 27780
Number of extensions: 113262
Number of successful extensions: 256
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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