Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19g03
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    28   0.70 
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   2.2  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   2.2  
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo...    24   8.7  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    24   8.7  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    24   8.7  

>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = -3

Query: 76  FLLRTSYSTIWPTYRKTYLKKI 11
           FL  +S++T++P YR+ YL+++
Sbjct: 48  FLEESSFATLFPKYREKYLREV 69


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 216 MSLKHAALSLWMRLYDRLRSLFSCLLHDQTLSRNSK 323
           M+ +H  LS   +L DR++SLF    HD++  RN++
Sbjct: 523 MTCEHGELSSKHKLGDRVKSLFGS--HDESGLRNNE 556


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +2

Query: 122 TRNPFSRKLGQQITVMRHSARCRVRAPDHLRNVPQTCRTVPLDALVRQTAFTL 280
           +RNP    L      M +  R  +R P +L NVP    T  LD L     F L
Sbjct: 687 SRNPSHGSLNTAHAGMGYGPRSMMRDPQNLSNVPPVSNT--LDQLSGNADFEL 737


>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
           orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 363 SIILVVFVFLFNKDITILYAKKK 431
           +IIL  FV+ +N DIT L  K K
Sbjct: 15  NIILTFFVYEWNHDITCLNFKVK 37


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 65  NKLQYNLAHISQNIFKKNT 9
           N L Y+L ++  NIFKK T
Sbjct: 816 NLLNYSLENVVLNIFKKQT 834


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +3

Query: 237 LSLWM-RLYDRLRSL---FSCLLHDQTLSRNSKVLYEKKETACYFASIILVVFV 386
           + LW   LY + RS+       +HD+ L R +  +       C+ A + LV+F+
Sbjct: 162 MRLWKPALYKKFRSINRDADIDIHDEPLKRPNTSISNVIWLICFGAPLFLVIFI 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,596
Number of Sequences: 5004
Number of extensions: 35059
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)