Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19g03
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                       28   2.8  
01_05_0454 + 22381302-22382642                                         27   4.9  
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390...    27   6.5  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +2

Query: 98  CSVRYHGTTRNPFSRKLGQQITVMRH---SARCRVRAPDHLRN-VPQTCRTV 241
           C+V +H   R  F+R  G    V+ H   +   R++ P   +  VP +CR +
Sbjct: 114 CNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAM 165


>01_05_0454 + 22381302-22382642
          Length = 446

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 256 KRIQRDSAACLRDIPQVVRRPHTATRRMSHYSYLLA 149
           + ++R SAAC R    ++RRP  ATR    +S LL+
Sbjct: 20  QHLRRASAACRR-YGDIIRRPGFATRHRELHSPLLS 54


>07_01_0525 +
           3904388-3904390,3904485-3904645,3905347-3905394,
           3905714-3905902,3906872-3906977
          Length = 168

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 216 FLRWSGALTRQRAECLITVICWPNFLEKGFLVVPWYL 106
           ++ W+G LT +  E L+TV+  P    + F V  W+L
Sbjct: 68  YVEWAGELTPEELERLMTVVANP----RQFKVPDWFL 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,377
Number of Sequences: 37544
Number of extensions: 207418
Number of successful extensions: 505
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)