Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19g01
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0675 - 23428948-23431389                                         28   4.3  
01_01_0593 + 4416283-4417403,4417516-4417927                           28   4.3  
11_03_0207 + 11675204-11676542,11676829-11676962,11677171-116774...    27   7.4  
10_06_0031 + 9842608-9842677,9842862-9843019                           27   9.8  
02_04_0604 + 24287169-24287199,24287859-24288044,24288389-242889...    27   9.8  

>06_03_0675 - 23428948-23431389
          Length = 813

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = +3

Query: 18  QFLLECDRETAQHCVYKFKTQFLNYKYYRHE-------NDLCIFNCCLSGYNY 155
           +F + CDR+     V    T+FL Y    H+        ++C+ +C   G++Y
Sbjct: 324 KFTISCDRKQKIRFVKLPTTEFLGYDQSTHQQVSLSTCKNICMSDCSCKGFSY 376


>01_01_0593 + 4416283-4417403,4417516-4417927
          Length = 510

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 6   FSLMQFLLECDRETAQHCVYKFKTQFLNY 92
           F  M FL+ CD  T  HC   F   F NY
Sbjct: 80  FLNMNFLITCDPATVNHC---FNANFKNY 105


>11_03_0207 +
           11675204-11676542,11676829-11676962,11677171-11677411,
           11677508-11677719,11677837-11677883,11677988-11678090,
           11678594-11678830
          Length = 770

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 102 RHENDLCIFNCCLSGYNYETTVFEFFIVFHF 194
           RH N +C+   C+ G   E++V   F+V+ +
Sbjct: 530 RHPNLVCLLGHCIDGEVDESSVKRVFLVYEY 560


>10_06_0031 + 9842608-9842677,9842862-9843019
          Length = 75

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 230 LTQQNKRLSHSWCHGRRYRICSC 298
           L  ++ R+  +WCHGRR   C+C
Sbjct: 52  LRGKHARVMRAWCHGRR---CNC 71


>02_04_0604 +
           24287169-24287199,24287859-24288044,24288389-24288923,
           24289244-24289280
          Length = 262

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 354 WLFISISRTVYFWTIKVFW 298
           WLF+ I  TVYF+ ++  W
Sbjct: 174 WLFLMIFMTVYFFVVRRKW 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,551,069
Number of Sequences: 37544
Number of extensions: 153371
Number of successful extensions: 321
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)