Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19f23
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    27   2.3  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    26   4.1  
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces...    25   5.4  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   7.2  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   9.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   9.5  

>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 408 KNSSLAPSSTAATRELTSAALSEEI 334
           KN+SL+PSS+ A  + T  +L E+I
Sbjct: 14  KNASLSPSSSPAKAQRTHLSLEEKI 38


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 408 KNSSLAPSSTAATRELTSAALSEEI 334
           +N ++ PSST  TR  T+  L EE+
Sbjct: 559 QNPNILPSSTNPTRPFTTNTLDEEL 583


>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 465 FNRDALLVSGIT**LSCASKNSSLAPSSTAATRELTSAALSEEILGSILSVTC 307
           F +     SGI    S A   S      T A+ E +S   S++++ +ILS+TC
Sbjct: 56  FKKSESQASGI---YSQAEAESKKQVQDTFASIETSSQKNSDKVVDAILSITC 105


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 140 DREYLQHQNFDFPCY 96
           DR +L+HQNFD   Y
Sbjct: 666 DRSFLKHQNFDVCVY 680


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 522 KYLYLISLSISCAFPGAFFFNRDALLVSGIT 430
           KY+ + S+ ++  F G F    D L+VS +T
Sbjct: 646 KYMLISSIQMAGVFLGVFIRKDDHLVVSKVT 676


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 191 RIPQYLKKTKTYLRYPLDREYLQHQN 114
           R+P   KKT    R P++  +LQ  N
Sbjct: 177 RLPSQAKKTSAIERVPVNLNFLQSDN 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,340
Number of Sequences: 5004
Number of extensions: 31163
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)