Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19f23
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    31   0.69 
Z70312-7|CAH04716.1|  263|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z70311-13|CAA94375.2|  263|Caenorhabditis elegans Hypothetical p...    28   3.7  
Z70311-7|CAH04719.1|  154|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine rece...    28   4.9  
Z81547-4|CAB04458.1|  368|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    27   8.6  

>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
           protein Y54E2A.6 protein.
          Length = 1798

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 356 EVNSLVAAVEEGAKEEFFDAHESYHVIPETSNASRLKKKAPGNAQDME 499
           ++N +  A+ EG+K + F  HES +V P  SN   ++K      +DM+
Sbjct: 35  DINGMKFALPEGSKRDTFKTHESVYVPP--SNKGDIEKIQHVYVKDMD 80


>Z70312-7|CAH04716.1|  263|Caenorhabditis elegans Hypothetical
           protein T25B9.3a protein.
          Length = 263

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 146 PLDREYLQHQNFDFPCYLLPVSTMKCCVKLLFVY*MVL 33
           P+ ++ +QH +F F    LP    KC    +F Y  +L
Sbjct: 178 PVSQQVIQHASFHFDLSKLPKEDRKCSTICVFPYLRIL 215


>Z70311-13|CAA94375.2|  263|Caenorhabditis elegans Hypothetical
           protein T25B9.3a protein.
          Length = 263

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 146 PLDREYLQHQNFDFPCYLLPVSTMKCCVKLLFVY*MVL 33
           P+ ++ +QH +F F    LP    KC    +F Y  +L
Sbjct: 178 PVSQQVIQHASFHFDLSKLPKEDRKCSTICVFPYLRIL 215


>Z70311-7|CAH04719.1|  154|Caenorhabditis elegans Hypothetical
           protein T25B9.3b protein.
          Length = 154

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 146 PLDREYLQHQNFDFPCYLLPVSTMKCCVKLLFVY*MVL 33
           P+ ++ +QH +F F    LP    KC    +F Y  +L
Sbjct: 69  PVSQQVIQHASFHFDLSKLPKEDRKCSTICVFPYLRIL 106


>U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 31 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -1

Query: 508 NFTFHILCISGGFFLQS*RVTGFWNNMIALVCIEEFLFSAFLN 380
           N  F +L I    FL    +   W N I   C    LFSA +N
Sbjct: 24  NHCFILLIIISSVFLTVFAIRKLWKNNIFPNCTRTLLFSAIIN 66


>Z81547-4|CAB04458.1|  368|Caenorhabditis elegans Hypothetical
           protein F53F8.5 protein.
          Length = 368

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +3

Query: 318 IKWSRVFLRRAQQKSILSLQQLRKALKRNSSMHTRAIMLFQKPVTRHD*RKKPPEMHKIW 497
           IK ++  + R  +++I    Q + A  +       A++      + H   K PP+ H+I+
Sbjct: 61  IKAAKSAIEREAEEAIQEEPQSKPAANKARITAPGALLASSSSSSEHRRGKPPPDRHEIY 120

Query: 498 KVKL 509
            VK+
Sbjct: 121 HVKM 124


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
           protein W03F11.4 protein.
          Length = 1406

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 420 SCASKNSSLAPSSTAATRELTSAALSEEILGSILSV 313
           S A    S+APS+T A+ E +S ++   I+G+++ V
Sbjct: 851 SAAQNAPSIAPSTTEASEEESSGSMLWIIIGAVVVV 886


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,343,356
Number of Sequences: 27780
Number of extensions: 172590
Number of successful extensions: 607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)