Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19f23
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.21 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    26   0.28 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.49 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.49 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.0  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 442 FWNNMIALVCIEEFLFSAFLNCCN 371
           FW N  +L    EF FS  LNC N
Sbjct: 14  FWQNSASLENDNEFGFSYLLNCKN 37


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 339 LRRAQQKSILSLQQLRKALKRNSSMHTRAIMLFQKPVTRHD*RKKPPE 482
           LR A+  S++ L +L + ++  S      I L+Q+P   ++ R  PP+
Sbjct: 208 LRLAKLLSLVRLLRLSRLVRYVSQWEEVYIPLYQQPERHYERRATPPQ 255


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 526 YQISLFNFTFHILCISGGFFLQS*RVTGFWNNMIALV 416
           Y  +LF    H+LCI  G F     +T  W  M++++
Sbjct: 326 YSWALFKAMSHMLCIGYGRFPPQ-SLTDMWLTMLSMI 361


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 526 YQISLFNFTFHILCISGGFFLQS*RVTGFWNNMIALV 416
           Y  +LF    H+LCI  G F     +T  W  M++++
Sbjct: 294 YSWALFKAMSHMLCIGYGRFPPQ-SLTDMWLTMLSMI 329


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 2   INEKILKM*KSKPFNKQTKVLHSI 73
           +N+K  ++ +SKP + + KVL  I
Sbjct: 259 VNQKFSELIQSKPQHARRKVLAGI 282


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 33  QNHSINKQKFYTAFH 77
           Q+H++ K   Y AFH
Sbjct: 274 QDHTLEKSNDYYAFH 288


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 238 VFLNFMNIHHKRCSVV 191
           ++LN M  H  RC+ V
Sbjct: 689 IYLNTMESHEVRCTAV 704


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,359
Number of Sequences: 438
Number of extensions: 1941
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)