Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19f22
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...   197   1e-51
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    28   0.98 
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    28   1.3  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    28   1.3  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    27   1.7  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    27   2.3  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    27   3.0  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    26   4.0  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   5.2  
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    25   6.9  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   6.9  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    25   9.1  

>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score =  197 bits (480), Expect = 1e-51
 Identities = 90/151 (59%), Positives = 117/151 (77%)
 Frame = +3

Query: 183 TPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLICIRPLKSRYVGEIGDVVVGR 362
           TPG+++T    FMRGHGTY ED  + ASVAG +Q+VNKLI ++PL+S+YV EIGD+++G+
Sbjct: 59  TPGQLVTDDPQFMRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGK 118

Query: 363 VLEVQQKRWKVDTNSRLDSILQLSSVNLPGGELRRRSEEDEQMMRKHLQEGDLISAEVQN 542
           + EVQ KRWKVD  ++ +++L LSS+NLPGG  RR+ E DE  MR   QEGDL+ AEVQ 
Sbjct: 119 IAEVQPKRWKVDIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQ 178

Query: 543 VFSDGSLSLHTRSLKYGKLSQGTLIKVFPSL 635
            FSDGS+S+HTRSLKYGKL  G  +KV P+L
Sbjct: 179 YFSDGSVSIHTRSLKYGKLRNGVFLKVPPAL 209


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 276  VMQKVNKLICIRPLKSRYVGEIGDVVVGRVLEVQQKRWKVDTNSR 410
            ++ K  KL+ +RPL +R + + G      + E+  K   V T S+
Sbjct: 1002 IVNKTGKLVALRPLVNRRLADAGIASRCEICEINDKNEIVKTRSQ 1046


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 389 PSFLLNFQYSSDYHIAYFSNVTTLQWANAYKFIYFLHNPSN 267
           PS  LNF+Y SD   AY+    + +WA+     Y ++N +N
Sbjct: 282 PSEFLNFEYDSDLDYAYWGGPAS-EWASTLGGAY-VNNLAN 320


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 78   ELKKTLEMVS-HVSIKL-ASERVNHSVASNNDPPRFYTPGEVI 200
            E  KTL  ++  V+ KL +SE +N S     D P FY P E+I
Sbjct: 1238 EFNKTLSTINLEVANKLTSSEYINDSEMQLIDDPVFYPPYEII 1280


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 583 KLLVCNESEPSENTFCTSALIKSPSCKCFLIICSSSSERLLNS 455
           K L  + +  S N  CT  +I+ P      ++CSS S R++ S
Sbjct: 218 KSLTIDGTNISANLSCTHLVIQIPKVIQATLVCSSESTRVVKS 260


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/70 (25%), Positives = 36/70 (51%)
 Frame = +3

Query: 225 GHGTYAEDDCLKASVAGVMQKVNKLICIRPLKSRYVGEIGDVVVGRVLEVQQKRWKVDTN 404
           GHGT+     +     GV +   KL+ ++ +++   G + D++ G  +E   K+ K D  
Sbjct: 236 GHGTHVAGT-IAGKTFGVSKNA-KLVAVKVMRADGTGTVSDIIKG--IEFAFKQSKKDKE 291

Query: 405 SRLDSILQLS 434
           S + S++ +S
Sbjct: 292 S-IASVVNMS 300


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 378 QKRWKVDTNSRLDSILQLSSVNLPGGELRRRSE 476
           +K W  D NS   S  ++ S++  GG L +++E
Sbjct: 166 RKSWNPDVNSTTSSPSEVGSLDKAGGPLNQQNE 198


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 531 QRLSNHLPVNVFSSSAHPLLNAFSILRQVDLLKKVEVL 418
           Q + NH  + V  +S H  LN F  L   ++L  + +L
Sbjct: 356 QVMGNHATITVAGASGHCELNVFKPLLAKNILSSIRLL 393


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 402 NSRLDSILQLSSVNLPGGELRRRSEEDEQMMRKHLQEGDLISA 530
           +S + S +  +S N+   ++     E EQ+   +   GDL SA
Sbjct: 56  HSPVPSFMSTASTNISSSKINNNQTEFEQLRDSYKSHGDLNSA 98


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = +3

Query: 69  AKRELKKTLEMVSHVSIKLASER-----VNHSVASNNDPPRFYTPGEVITGIQDFMR 224
           A ++L ++   VS +   L S++     ++H + S  +PP +  P  + + I+ F+R
Sbjct: 198 AFQQLSESFSNVSRMIPLLKSQKARIIGLSHGILSAYEPPNYAVPSILSSSIETFLR 254


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 48  VVHNSQLAKRELKKTLEMVSHVSIKLASERVNHSVASNNDP 170
           ++H++ L +R+   +LE VS    + A   V     SNN P
Sbjct: 143 LIHSTLLEERDTPSSLEHVSFYLQESAVSEVRFDKPSNNGP 183


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 477 EDEQMMRKHLQEGDLISAEVQNVFSDGSLSL 569
           E + M + HLQ   L+  +V+N F+  + SL
Sbjct: 91  EVDNMAKSHLQISQLLQDDVENAFTRYAASL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,534
Number of Sequences: 5004
Number of extensions: 51803
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)