Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19f22
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 139 1e-33
02_05_1212 - 34960977-34961097,34961283-34961371,34962165-349622... 32 0.33
06_03_1122 - 27775141-27775333,27775414-27775604,27775907-277770... 30 1.8
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12... 29 2.3
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 29 3.1
11_06_0077 - 19843056-19844984 28 7.1
11_01_0204 - 1612505-1612636,1612809-1612926,1613050-1613162,161... 28 7.1
08_02_0228 + 14502718-14503038 28 7.1
06_01_0004 - 59511-59576,59749-59806,60101-60144,60455-60512,608... 28 7.1
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 27 9.4
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13... 27 9.4
06_01_0016 + 184804-185025,185121-185237,185324-185737,185827-18... 27 9.4
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 27 9.4
>04_04_0529 -
25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 139 bits (337), Expect = 1e-33
Identities = 65/137 (47%), Positives = 96/137 (70%)
Frame = +3
Query: 213 DFMRGHGTYAEDDCLKASVAGVMQKVNKLICIRPLKSRYVGEIGDVVVGRVLEVQQKRWK 392
+ ++GHGT +D + A++ GV+++VNKL+ +R L++RY E+GD++VGRV+E+ KRW+
Sbjct: 45 NILKGHGTSDQDGEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWR 104
Query: 393 VDTNSRLDSILQLSSVNLPGGELRRRSEEDEQMMRKHLQEGDLISAEVQNVFSDGSLSLH 572
++ N D++L LSS+NLP G RRR+ DE MR +E D+I AEV+ DGSL L
Sbjct: 105 LEINFSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGSLHLQ 164
Query: 573 TRSLKYGKLSQGTLIKV 623
RS KYGKL +G L+ V
Sbjct: 165 ARSQKYGKLERGQLLVV 181
>02_05_1212 -
34960977-34961097,34961283-34961371,34962165-34962239,
34962330-34962488
Length = 147
Score = 32.3 bits (70), Expect = 0.33
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 10/136 (7%)
Frame = +3
Query: 159 NNDPPRFYTPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKV-------NKLICIRPL 317
++D TPGE++ G + G G YA+ C++AS+ G + V ++ + +
Sbjct: 2 DHDGGEVVTPGELL-GNSSLLAGLGAYADGRCVRASITGHRRLVPPPPGSTDQRSTVEVV 60
Query: 318 KSRYVGEI---GDVVVGRVLEVQQKRWKVDTNSRLDSILQLSSVNLPGGELRRRSEEDEQ 488
+ G + G VV+ RV +V + D ++ + + R +E D+
Sbjct: 61 GHKAHGAVPQPGSVVIARVTKVMARMASADIMCVDSKAVKEKFTGMIRQQDVRATEIDKV 120
Query: 489 MMRKHLQEGDLISAEV 536
M + + GD++ A V
Sbjct: 121 DMFQSYRPGDIVRALV 136
>06_03_1122 -
27775141-27775333,27775414-27775604,27775907-27777099,
27777206-27777353,27777534-27777609,27777696-27777818,
27777886-27778050,27778169-27778259,27778580-27778664,
27778745-27778900,27778992-27779048,27779138-27779236,
27779381-27779499,27780145-27780202
Length = 917
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1
Query: 568 NESEPSENTFCTSALIKSPSC--KCFLIICSSSSERLLNSPPGRF 440
N PS+N F + S C + + CS +S++++N PP F
Sbjct: 744 NFLSPSQNDFPLDQTLSSADCLDESGYVPCSQNSDQVINRPPATF 788
>12_01_0017 -
127617-127775,127920-128000,128284-128395,128486-129538,
129617-129705,130136-130309,130566-130687,130790-130924,
131132-131494,131561-131728,131850-131889
Length = 831
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 607 PCESLPYFKLLVCNESEPSENTFCTSALIKSPSC 506
P E + K+ +C+ SEPS + T++ I SP C
Sbjct: 469 PAEDSCFLKV-ICSSSEPSVGSNLTTSCISSPGC 501
>02_01_0689 +
5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 96 EMVSHVSIKLASERVNHSVA-SNNDPPRFYTPGEVITGIQDFMRGHG 233
E VS +++ S RV H SN D + G V+TG+QD + G
Sbjct: 487 EFVSSLTVASGSLRVVHKNGQSNGDVMSYGRHGSVVTGLQDHTQPSG 533
>11_06_0077 - 19843056-19844984
Length = 642
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 561 ANHQKIHSVLQRLSNHLPVNVFSSSAHPLLNAFSILRQVDLLKKVE 424
A H K ++++RL P + SSS+ L I R+ +L K E
Sbjct: 298 AQHGKEENIIRRLYRRSPPEIISSSSSNKLGNARIFREGELKKVTE 343
>11_01_0204 -
1612505-1612636,1612809-1612926,1613050-1613162,
1613640-1613712,1613797-1613936,1614059-1614129,
1614262-1614430,1614625-1614690,1615081-1615179,
1615298-1615471,1615745-1615823,1615929-1616035,
1616395-1616439
Length = 461
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 615 LKFPVKACHISNFLYAMRANHQKIHSVLQRLSNHLPVNVFSS 490
L++ + S+FL ++ + H+ R+ NH+PV +F S
Sbjct: 185 LEWTCEVWDFSSFLNSLAESGAVAHNEDDRIHNHVPVKIFGS 226
>08_02_0228 + 14502718-14503038
Length = 106
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 297 LICIRPLKSRYVGEIGDVVVGRVLEVQQKRWK 392
+IC L +R +G +V G LEV+Q+RW+
Sbjct: 57 VICRLRLAARLMGGQSEVGAGCGLEVEQQRWR 88
>06_01_0004 - 59511-59576,59749-59806,60101-60144,60455-60512,
60810-60867,61165-61222,61871-61928,62225-62282,
62579-62636,62933-62990,63285-63328,63639-63696,
64699-64742,65053-65110,65407-65464,66114-66171,
66468-66818,68051-68108,68405-68462,68759-68816,
69113-69170,69466-69509,69820-70170,71048-71091,
71755-71812,72109-72291,72463-72520,72815-72858,
73877-73920,74584-74641,74938-74995,75292-75349,
75643-75700,75997-76179,76351-76408,76702-76745,
77056-77238,77410-77467,77766-77823,78120-78177,
78473-78530,78826-78869,79180-79362,79534-79591,
79885-79942,80239-80296,80592-80649,80946-81003,
81652-81709,82361-82440,83067-83124,83421-83603,
84127-84184,84480-84537,85188-85245,85541-85598,
85895-85950
Length = 1472
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -3
Query: 380 LLNFQYSSDYHIAYFSNVTTLQWANAYKFIYFLHNPSNRCF*AII 246
LL Q I F+ T W + Y P+NRCF A +
Sbjct: 976 LLRGQCCGPSDIRRFAETTAASWPMLWTLRYSTFRPNNRCFVAYV 1020
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 294 KLICIRPLKSRYVGEIGDVVVGRVLEVQQK 383
+++CI+ L+ + +GD ++G V E Q +
Sbjct: 68 RVMCIQSLRGKKGARLGDTIIGSVKEAQPR 97
>11_01_0017 -
129261-129335,129352-129426,129565-129645,129929-130040,
130131-131177,131256-131347,131773-131943,132150-132253,
132367-132501,132583-132724,132803-133059,133126-133337,
133417-133454
Length = 846
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 607 PCESLPYFKLLVCNESEPSENTFCTSALIKSPSC 506
P E + K+ +C+ SEP+ T++ I SP C
Sbjct: 487 PAEDSCFLKV-ICSSSEPTVGRNLTTSCISSPGC 519
>06_01_0016 +
184804-185025,185121-185237,185324-185737,185827-186888
Length = 604
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 537 VLQRLSNHLPVNVFSSSAHPLLNAFSILRQVDLLKK 430
+L L +HLP + SSS+ PL +A R DLL+K
Sbjct: 32 LLAPLLDHLPASSSSSSSTPLADALGAAR--DLLRK 65
>03_06_0399 -
33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -2
Query: 564 RANHQKIHSVLQRLSNHLPVNVFSSSAHPLLNAFSILRQVDLLKKVEVLNQVVNWYQLS 388
R IH+ QRL F SA P+ S + + L+K+E+L + V+ LS
Sbjct: 220 RVQLDSIHAESQRLLRETRSVSFKPSAQPVYKPISSVLEKIRLRKLEILKKSVSLLFLS 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,596,609
Number of Sequences: 37544
Number of extensions: 300065
Number of successful extensions: 841
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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