Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19f21
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 97 2e-21
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 36 0.005
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 28 0.91
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 27 2.1
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 4.8
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 6.4
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 6.4
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 6.4
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 25 8.5
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 25 8.5
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 25 8.5
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 25 8.5
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 97.1 bits (231), Expect = 2e-21
Identities = 50/181 (27%), Positives = 97/181 (53%), Gaps = 1/181 (0%)
Frame = +3
Query: 60 KVSFPAYHSIMIVNRRIISSLFTTTRSYQVTVVGATSEVGQVXXXXXXXXXXITKLVVHD 239
KV+F + + + R S+ T++R+++V V+GA +GQ +++L + D
Sbjct: 4 KVAFKNFTPLKSIAPRSFST--TSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFD 61
Query: 240 NKEFTPGVTLDLSQIPSPSRILGLTGEDT-LERALKNSDLIIAAGGLSQRPDISEKALLT 416
+ PGV D+ I + S ++G +D LE+AL +D++I G+ ++P ++ L
Sbjct: 62 IRG-APGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFA 120
Query: 417 ANSQFIKSIISKLGRSCPIPFVGIVTEPINYLIPMTAEIMRNHGVYDEKKLFGITEIDAI 596
N+ ++ + G +CP +VT P+N +P+ + + GV+ K LFG+T +D++
Sbjct: 121 TNASIVRDLAFAAGETCPEAKYLVVTNPVNSTVPIFKKALERVGVHQPKHLFGVTTLDSV 180
Query: 597 R 599
R
Sbjct: 181 R 181
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 35.9 bits (79), Expect = 0.005
Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Frame = +3
Query: 135 RSYQVTVVGATSEVGQVXXXXXXXXXXITKLVVHD-NKEFTPGVTLDLSQIPSPSRILGL 311
+S ++ +VGA VG ++V+ D NK+ G +DL+ S +
Sbjct: 19 KSIKIVIVGA-GNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDLNHAAPLSHETRV 77
Query: 312 TGEDTLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIV 491
D + K++ ++ G +Q+P + LL AN K I+ ++ + + +
Sbjct: 78 YLGDYKD--CKDATAVVITAGKNQKPGETRMDLLKANISIFKEILREVTKYTKDAILLVA 135
Query: 492 TEPINYLIPMTAEI 533
T P++ L T ++
Sbjct: 136 TNPVDVLTYATLKL 149
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 28.3 bits (60), Expect = 0.91
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 110 YSSIHYHNAMIRGKTYFEFFEFKRIL 33
Y +HYHN + K +F+ + KR L
Sbjct: 349 YIMLHYHNKPLEHKAFFQKYSSKRFL 374
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3
Query: 429 TGYSLSTELFHLYLDVV 379
TGY S E FHLYLDV+
Sbjct: 151 TGYIDSCEEFHLYLDVL 167
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 412 NRAFSLISGRCESPPAAMIKSEFLRARSKVSSPVN 308
N S RC +PP KS+ L S +S PV+
Sbjct: 477 NYRISYGKDRCGNPPRTNSKSDVLSVSSDMSMPVD 511
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 6.4
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = -2
Query: 409 RAFSLISGRCESPPAAMIKSEFLRARSKVSSPVNPNIREGLGICDK---SNVT--PGVNS 245
RA +L + + PP + K + +++ SP+ P +E + + SN+T P VN+
Sbjct: 616 RAVNLSPSKNQKPPKILTKIPDIFSKAGKKSPILPTFQESCSLPIEPFSSNITDLPFVNT 675
Query: 244 LLS*TTNLVIK 212
+ +T+ IK
Sbjct: 676 VTLASTSSKIK 686
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 355 KSEFLRARSKVSSPVNPNIREGLGIC-DKSNVTPGVNSL 242
KSE +RS V S P + E G C K+ PG SL
Sbjct: 286 KSESSPSRSSVLSTSKPEVHETEGYCPHKTGNRPGFPSL 324
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 321 DTLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIIS 449
+++ AL SD+++ + P I L N QF+++ IS
Sbjct: 670 ESIINALTPSDMLLIKDVVENNPQIRANPSLAINPQFMQNAIS 712
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 331 SKVSSPVNPNIREGLGICDKSN 266
SKVSSP+NP + +GI ++ N
Sbjct: 127 SKVSSPMNPKHQVHVGIDNEGN 148
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 89 YDSESKNNLVVVHHNKKLPSYGSWRNKRSRSSPESITEIFT 211
++ E+ N+ + +NK+L RN+R SPE ++T
Sbjct: 183 FNIENSNSKTLRLNNKQLAVESFARNERDTGSPEVQAAVYT 223
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 345 NSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIV 491
N ++ A +RPD+ LLT ++ + I+ K+ S + F G+V
Sbjct: 113 NEKIVSQARESIRRPDVLA-VLLTGRNEGFRGIVEKIIASKGLDFQGVV 160
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +3
Query: 375 LSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVT 494
L+ RP+ + L+ +N QF+K + +L +P + ++
Sbjct: 215 LNSRPNFDLRRLIGSNEQFLKELCDQLNDYELVPTLNAIS 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,956
Number of Sequences: 5004
Number of extensions: 43157
Number of successful extensions: 109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -