Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19f20
(594 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical pr... 31 0.82
AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein. 31 0.82
AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical ... 28 4.4
Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical pr... 28 5.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 5.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 5.8
AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein... 28 5.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 5.8
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 5.8
Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical p... 27 7.6
Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical p... 27 7.6
Z49127-11|CAA88952.2| 452|Caenorhabditis elegans Hypothetical p... 27 7.6
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 27 7.6
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 27 7.6
AL033535-4|CAA22134.2| 452|Caenorhabditis elegans Hypothetical ... 27 7.6
>Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical
protein DY3.7 protein.
Length = 922
Score = 30.7 bits (66), Expect = 0.82
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 443 QRHRRRNVNCAACCSRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLTTP 592
QRHR + QP A +TPSA+P PP + P + + P
Sbjct: 800 QRHRAAAGSVPPGPGAQPRSGAASAPSRTTPSARPSAPPLVAPQVAVAVP 849
>AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein.
Length = 922
Score = 30.7 bits (66), Expect = 0.82
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 443 QRHRRRNVNCAACCSRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLTTP 592
QRHR + QP A +TPSA+P PP + P + + P
Sbjct: 800 QRHRAAAGSVPPGPGAQPRSGAASAPSRTTPSARPSAPPLVAPQVAVAVP 849
>AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical
protein F09D1.1 protein.
Length = 602
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 199 KETYDDNFKHHDKRSRSKNKIPKNVRND 282
K T+D + K + RSRS+++ PK R D
Sbjct: 37 KRTHDRDRKRNRSRSRSRSRSPKRSRRD 64
>Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 493 LPRTASGTIHIAPPMTLDRHVSSQSSEPPDHRG 395
LP S + ++P TL ++ SQ + PDH G
Sbjct: 391 LPFGLSSPVMVSPYATLQLNMQSQQLDQPDHSG 423
>Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical
protein C33G3.1a protein.
Length = 793
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 493 LPRTASGTIHIAPPMTLDRHVSSQSSEPPDHRG 395
LP S + ++P TL ++ SQ + PDH G
Sbjct: 297 LPFGLSSPVMVSPYATLQLNMQSQQLDQPDHSG 329
>Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 493 LPRTASGTIHIAPPMTLDRHVSSQSSEPPDHRG 395
LP S + ++P TL ++ SQ + PDH G
Sbjct: 391 LPFGLSSPVMVSPYATLQLNMQSQQLDQPDHSG 423
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -2
Query: 593 SALSAVGTAASVAEVLAELMALTACDTALSILLAASNSKRHNSHCAADDAG 441
+A+ V TAA A VL EL T L L++A+NS+ S A G
Sbjct: 1234 AAMIRVSTAADKAGVLDELERATGNADFLQTLMSATNSRTPRSGLPARTRG 1284
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -2
Query: 593 SALSAVGTAASVAEVLAELMALTACDTALSILLAASNSKRHNSHCAADDAG 441
+A+ V TAA A VL EL T L L++A+NS+ S A G
Sbjct: 1234 AAMIRVSTAADKAGVLDELERATGNADFLQTLMSATNSRTPRSGLPARTRG 1284
>AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein
protein.
Length = 793
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 493 LPRTASGTIHIAPPMTLDRHVSSQSSEPPDHRG 395
LP S + ++P TL ++ SQ + PDH G
Sbjct: 297 LPFGLSSPVMVSPYATLQLNMQSQQLDQPDHSG 329
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -2
Query: 593 SALSAVGTAASVAEVLAELMALTACDTALSILLAASNSKRHNSHCAADDAG 441
+A+ V TAA A VL EL T L L++A+NS+ S A G
Sbjct: 817 AAMIRVSTAADKAGVLDELERATGNADFLQTLMSATNSRTPRSGLPARTRG 867
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 443 QRHRRRNVNCAACCSRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQLT 586
+R RRN N + + + S + R S+PS P PPP PS LT
Sbjct: 1307 RRGNRRNTNEHIQANHEDSDSFSTSRS-SSPSPPPPPPPPPPPSDDLT 1353
>Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical
protein K08E3.3b protein.
Length = 610
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 148 PFTAKASGDAVACDLRRKETYDDNFKHHDKRSRSKNKIPKN 270
PF + GD CD R ++ D + K S SKN+I +N
Sbjct: 284 PFEIEDLGDPKNCDSRTNDSADGSGGKLLKSSPSKNRIIRN 324
>Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical
protein K08E3.3a protein.
Length = 608
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 148 PFTAKASGDAVACDLRRKETYDDNFKHHDKRSRSKNKIPKN 270
PF + GD CD R ++ D + K S SKN+I +N
Sbjct: 284 PFEIEDLGDPKNCDSRTNDSADGSGGKLLKSSPSKNRIIRN 324
>Z49127-11|CAA88952.2| 452|Caenorhabditis elegans Hypothetical
protein F13D12.9 protein.
Length = 452
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 328 YLRTKRHIGQLKHSPNRFERFWEFYSCSCS--FYHD 227
+++ K I ++ + P F R W+FY C C+ F HD
Sbjct: 405 WMKAKDEIEKM-NLPFGFHRRWQFYFCLCAALFAHD 439
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 482 CSRQPTVSKARCRRLSTPSAQPV---PPPQMLPSLQL 583
C Q +S C + P++QPV PP LP +Q+
Sbjct: 321 CPAQTDLSNGECISVPAPTSQPVQVMTPPPTLPPVQV 357
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 482 CSRQPTVSKARCRRLSTPSAQPV---PPPQMLPSLQL 583
C Q +S C + P++QPV PP LP +Q+
Sbjct: 418 CPAQTDLSNGECISVPAPTSQPVQVMTPPPTLPPVQV 454
>AL033535-4|CAA22134.2| 452|Caenorhabditis elegans Hypothetical
protein F13D12.9 protein.
Length = 452
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 328 YLRTKRHIGQLKHSPNRFERFWEFYSCSCS--FYHD 227
+++ K I ++ + P F R W+FY C C+ F HD
Sbjct: 405 WMKAKDEIEKM-NLPFGFHRRWQFYFCLCAALFAHD 439
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,571,996
Number of Sequences: 27780
Number of extensions: 267165
Number of successful extensions: 1029
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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