Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19f19
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    28   1.2  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   2.0  
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.7  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   3.5  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   4.7  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   6.2  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   8.2  

>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/67 (23%), Positives = 29/67 (43%)
 Frame = +3

Query: 387 DGKRTTSNQTGQENGNPKIQKNVKDVIPESRLAQFYGNFYYDEDREKCYTNPNERLNPRT 566
           +G+    N+  +EN + ++    KD+    RL +  G   +D  ++   + P E     T
Sbjct: 479 EGRAKLLNENMRENNSFELSSE-KDIKSPKRLKRGKGKGIFDMLQQTAVSKPTENSADET 537

Query: 567 YNGNGCE 587
           Y    CE
Sbjct: 538 YTCEECE 544


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +3

Query: 435 PKIQKNVKDVIPESRLAQFYGNFYYDEDREKCY----TNPNE 548
           PK+ K + D  P S+      N+ Y+ D + CY    T+P+E
Sbjct: 94  PKVWKKLSDFEPHSKKNDTKCNWKYNPDLDYCYLDNSTSPDE 135


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = +3

Query: 90  PVYLRSSSYLVFIVFSPCIILKIINCMYEMSH*MNHQLDRYPSAWAHIVLCADLTW 257
           PVY+  S  ++  +F PC+ +       +      ++LD Y   + H     +L W
Sbjct: 21  PVYISRSISILNKIFHPCMYIYSRGITNDTYSSDTYELDWYDLGFVHFSKWVELAW 76


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +2

Query: 395 KNNIESNGTREW-QPEN 442
           KNN+  NG R+W QP N
Sbjct: 656 KNNVNGNGNRDWVQPVN 672


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -2

Query: 450 FFGFSGCHSLVPFDSMLFFCHLMTRMYSIVSSVILYCLEALETRGSAVTRVAGW 289
           F  FS     +PF +++ F HL +     VS  + + +  LE  G+   ++  W
Sbjct: 144 FIIFSPIIITLPFIALISFLHLRSLSSLTVSIWLRFLVTQLERAGATFIKLGQW 197


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 453 HFFGFSGCHSLVPFDSMLFFCHLMTRMYSIVSS 355
           +F  +      + FDS+ F C L+T+++ ++SS
Sbjct: 324 NFMAYIETKRKLEFDSIPFNCPLITQLFPLISS 356


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 448 FWIFGLPFSCPV*FDVVLLPSDDSHVL 368
           FW   L   CP  FD V+   DDS  L
Sbjct: 266 FWTSELCTQCPNLFDCVITVGDDSAAL 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,050
Number of Sequences: 5004
Number of extensions: 53396
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)