Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19f18
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.2  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   2.2  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   3.8  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    25   8.8  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    25   8.8  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   8.8  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +2

Query: 125 LIGKFILLFLIYVSSAILETKNSIKLFFEIVYEDNFSTFAEDLPNCVCNFKDATVDHFLY 304
           L+  F  +F +  S A+L+ +       E    ++     EDL +  C F  + VD   Y
Sbjct: 229 LLKVFSSVFKVAYSKALLDAEKLFPSIDEAAIAEDIGILIEDLESDACKFSHSVVDFSNY 288


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 306 KYKKWSTVASLKLHTQFGKSSAKVEKLSSYTISKKSLMLFFVSKIAE 166
           K +K   +  L+   Q   SS+  E+  S+ +SKK L L  +SK  E
Sbjct: 800 KLEKLLMIERLETSDQSPTSSSNFEESESFAVSKKVLELVRISKNKE 846


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -1

Query: 297  KWSTVASLKLHTQFGKSSAKVEKLSSYTISKKSLMLFFVSKIAEDT*IRKSRINLPIRAA 118
            KWST   L   +QF  S  KV++    +  +K ++    + IAED  I +  +   +   
Sbjct: 2142 KWSTPTKLVEPSQFRASPRKVDQAVVLSSEEKEILQKKYALIAEDNLIARKLLTKQLSNL 2201

Query: 117  KFTI 106
             F +
Sbjct: 2202 GFQV 2205


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/70 (22%), Positives = 27/70 (38%)
 Frame = -1

Query: 609 CKGTSVKKFVKFNKFIYASTVTFIAVSKVYLIITLTS*GR*TGINVSINHTVSPRNIIHF 430
           C G     F+K + F       F+ V   +      S G  T   ++  +T +    +  
Sbjct: 726 CLGNMYSHFIKSSSFAVVLPAIFVLVPSGFAAQGGVSAGLDTASQITSKNTTTNTTTVTT 785

Query: 429 ENINSTSLRF 400
           EN  ++SL F
Sbjct: 786 ENSQNSSLEF 795


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 340 LL*TNFNSDNYSANNWKCVC 399
           L+ + +N  NY   +W+C+C
Sbjct: 140 LVSSKYNPKNYWNGSWRCIC 159


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 173 ILETKNSIKLFFEIVYEDNFSTFAEDLPNCVCNFKDATVDHF 298
           +LET  SI   FEIV  D   + +E     + + +D   D+F
Sbjct: 522 VLETPLSISDLFEIVNGDEDKSESEKFTRLLVSRRDMLKDYF 563


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +2

Query: 164 SSAILETKNSIKLFFE----IVYEDNFSTFAEDLPNCVCNFK 277
           S A L  +  I+ F E     + +D F T   DLPN V NF+
Sbjct: 277 SLAKLNIETQIQYFVEDAEAYIKDDKFCTKHADLPNLVNNFE 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,545
Number of Sequences: 5004
Number of extensions: 41077
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)