Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19f17
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948...    29   3.6  
03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376     29   3.6  
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454...    28   6.3  
10_05_0013 + 7986281-7986434,7986664-7986743,7987583-7987656,798...    28   8.4  

>05_06_0132 +
           25893241-25893435,25894266-25894487,25894567-25894863,
           25894944-25895111,25895201-25895368,25895456-25895536,
           25895704-25895770,25895874-25895971,25896587-25896659,
           25896753-25896823,25896919-25896968,25897698-25897810,
           25898182-25898300,25898629-25898721,25899025-25899051,
           25899422-25899823,25900467-25900513,25900612-25900651,
           25900733-25900795,25900881-25901018,25901873-25902031,
           25902111-25902164,25902324-25902392,25902514-25902643,
           25902909-25902949,25903133-25903178,25903200-25903357,
           25903560-25903605,25903702-25903853,25904022-25904243
          Length = 1202

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 88  KDQQLNALDAGELDLFVESMEPSRIDSIGNQAWVDWHIR--LQKLNQQAVLEASSMREEL 261
           ++Q     DA  L  +   M    IDS+ N A+++W ++  LQK+  + + E S     L
Sbjct: 200 REQMSYTYDA--LKCYAPEMVEVLIDSVRNPAFLEWEVKEQLQKIKSE-ISEVSGDPHGL 256

Query: 262 TKETLISCG 288
             E L S G
Sbjct: 257 LMEALHSAG 265


>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
          Length = 798

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 380 IIPLAYIWFCITKQPRWDCWKLFCFTRTARPVSPKSPL 493
           ++  +++W  + K  +  C  L  F R  +P  P++PL
Sbjct: 731 VLSRSWVWSGVVKLSKSSCTSLVHFVRALQPAPPEAPL 768


>01_06_0648 -
           30844289-30844341,30844536-30844648,30845435-30845484,
           30845572-30845642,30845725-30845797,30846744-30846841,
           30846936-30847002,30847150-30847230,30847312-30847479,
           30847563-30847730,30847813-30848109,30848205-30848426,
           30849287-30849325
          Length = 499

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 133 FVESMEPSRIDSIGNQAWVDWHIR--LQKLNQQAVLEASSMREELTKETLISCG 288
           +V  M    IDS+ N A+ +W I+  L+K+  + + E S   + L  E L S G
Sbjct: 161 YVPEMVEVLIDSVRNPAFFNWEIKEQLEKIKAE-IAEVSDNPQGLLLEALHSAG 213


>10_05_0013 +
           7986281-7986434,7986664-7986743,7987583-7987656,
           7988186-7988252
          Length = 124

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 374 HQIIPL-AYIWFCITKQPRW 430
           H+ IP  AY+W+C  +QP W
Sbjct: 26  HRCIPRRAYLWWCRCRQPPW 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,212,918
Number of Sequences: 37544
Number of extensions: 371021
Number of successful extensions: 849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)