Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19f17
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.8  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 404 FCITKQPRWDCWK 442
           +C+ K PRWD  K
Sbjct: 179 YCVVKIPRWDLGK 191


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 358 VKLEPAPN-NTFGLYMVLYHEAAAVGLLETVLFHEDGATCISEIAIDLLQYALDQL 522
           V  +P  N N + +  V     A  GL E    H   A CI+ +A+D++  A D++
Sbjct: 449 VLTDPKKNPNVYKVETVGDKYMAVSGLPEPCRCH---ARCIARLALDMMDLAADEV 501


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 358 VKLEPAPN-NTFGLYMVLYHEAAAVGLLETVLFHEDGATCISEIAIDLLQYALDQL 522
           V  +P  N N + +  V     A  GL E    H   A CI+ +A+D++  A D++
Sbjct: 449 VLTDPKKNPNVYKVETVGDKYMAVSGLPEPCRCH---ARCIARLALDMMDLAADEV 501


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 532 LALINTGYLKPISVNDIECESPIEELERQKRDL-QFDISMRCISIVRYLAEHME 690
           L  I+   LK   +   E  + ++E  ++K D+ + D+S RC  +  ++   ++
Sbjct: 432 LTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLASFMGNLLQ 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,088
Number of Sequences: 438
Number of extensions: 4398
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)