Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19f15
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 30 0.31
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 28 1.3
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 27 1.7
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.9
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 3.8
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 5.1
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 25 6.7
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 8.8
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 25 8.8
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 29.9 bits (64), Expect = 0.31
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +3
Query: 393 KRTTSNQTGQENGNPKIQKNVKDVIPESRLAQ------FYGNFYYDEDREKCYTNPNERL 554
KR S +G +P I KN K+V P + + Q + +FY +++K Y ++
Sbjct: 60 KRFHSTHSGN---SPSIMKNKKNVTPNNNIRQKNTATSSHPSFYIANNKQKGYDEEMYKV 116
Query: 555 NPRTYNGNGCEN 590
NP + N + N
Sbjct: 117 NPASRNKSQSNN 128
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +3
Query: 387 DGKRTTSNQTGQENGNPKIQKNVKDVIPESRLAQFYGNFYYDEDREKCYTNPNERLNPRT 566
+G+ N+ +EN + ++ KD+ RL + G +D ++ + P E T
Sbjct: 479 EGRAKLLNENMRENNSFELSSE-KDIKSPKRLKRGKGKGIFDMLQQTAVSKPTENSADET 537
Query: 567 YNGNGCE 587
Y CE
Sbjct: 538 YTCEECE 544
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Frame = +3
Query: 435 PKIQKNVKDVIPESRLAQFYGNFYYDEDREKCY----TNPNERL------NPRTYNGNGC 584
PK+ K + D P S+ N+ Y+ D + CY T+P+E + NP + G
Sbjct: 94 PKVWKKLSDFEPHSKKNDTKCNWKYNPDLDYCYLDNSTSPDEYVYVSLVQNPERFTGYAG 153
Query: 585 ENS 593
++S
Sbjct: 154 DHS 156
>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 140
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = +3
Query: 90 PVYLRSSSYLVFIVFSPCIILKIINCMYEMSH*MNHQLDRYPSAWAHIVLCADLTW 257
PVY+ S ++ +F PC+ + + ++LD Y + H +L W
Sbjct: 21 PVYISRSISILNKIFHPCMYIYSRGITNDTYSSDTYELDWYDLGFVHFSKWVELAW 76
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = +2
Query: 395 KNNIESNGTREW-QPEN 442
KNN+ NG R+W QP N
Sbjct: 656 KNNVNGNGNRDWVQPVN 672
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -1
Query: 450 FFGFSGCHSLVPFDSMLFFCHLMTRMYSIVSSVILYCLEALETRGSAVTRVAGW 289
F FS +PF +++ F HL + VS + + + LE G+ ++ W
Sbjct: 144 FIIFSPIIITLPFIALISFLHLRSLSSLTVSIWLRFLVTQLERAGATFIKLGQW 197
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 453 HFFGFSGCHSLVPFDSMLFFCHLMTRMYSIVSS 355
+F + + FDS+ F C L+T+++ ++SS
Sbjct: 324 NFMAYIETKRKLEFDSIPFNCPLITQLFPLISS 356
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 448 FWIFGLPFSCPV*FDVVLLPSDDSHVL 368
FW L CP FD V+ DDS L
Sbjct: 266 FWTSELCTQCPNLFDCVITVGDDSAAL 292
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 504 YYDEDREKCYTNPNERLNPRTYNGNGCENSD 596
+YDE + +++P++ + T GCEN++
Sbjct: 358 HYDEPSQYYFSSPSKLSSETTKVHRGCENTE 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,063
Number of Sequences: 5004
Number of extensions: 55811
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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