Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19f15
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna bi...    31   0.66 
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso...    29   3.5  
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso...    29   3.5  
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor...    29   3.5  
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor...    29   3.5  
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor...    29   3.5  
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor...    29   3.5  
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor...    29   3.5  

>U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 7 protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 417 GQENGNPKIQKNVKDVIPESRLAQFYGNFYYDEDREKCYTNPNERLNPRTYNGN 578
           G   G+ +  +  K VI E  +A  +G  Y D DRE+  +    + + R   GN
Sbjct: 193 GGGKGDTRKTREAKSVIEEREIASGFGGGYEDRDRERSGSRDRRQDSYRNGGGN 246


>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform g protein.
          Length = 1604

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 420  QENGNPKIQKNVKDVIPESRLAQFYGNFYYDEDREKC 530
            Q  G   + K  +  + + R  +F   FY+D DR+KC
Sbjct: 914  QPAGKSCLDKFDERYLEDCRHGEFTNRFYFDHDRKKC 950


>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform f protein.
          Length = 1818

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 420  QENGNPKIQKNVKDVIPESRLAQFYGNFYYDEDREKC 530
            Q  G   + K  +  + + R  +F   FY+D DR+KC
Sbjct: 1128 QPAGKSCLDKFDERYLEDCRHGEFTNRFYFDHDRKKC 1164


>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform e protein.
          Length = 1954

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 420  QENGNPKIQKNVKDVIPESRLAQFYGNFYYDEDREKC 530
            Q  G   + K  +  + + R  +F   FY+D DR+KC
Sbjct: 1264 QPAGKSCLDKFDERYLEDCRHGEFTNRFYFDHDRKKC 1300


>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform b protein.
          Length = 1685

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 420  QENGNPKIQKNVKDVIPESRLAQFYGNFYYDEDREKC 530
            Q  G   + K  +  + + R  +F   FY+D DR+KC
Sbjct: 1313 QPAGKSCLDKFDERYLEDCRHGEFTNRFYFDHDRKKC 1349


>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform d protein.
          Length = 1995

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 420  QENGNPKIQKNVKDVIPESRLAQFYGNFYYDEDREKC 530
            Q  G   + K  +  + + R  +F   FY+D DR+KC
Sbjct: 1305 QPAGKSCLDKFDERYLEDCRHGEFTNRFYFDHDRKKC 1341


>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform h protein.
          Length = 2006

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 420  QENGNPKIQKNVKDVIPESRLAQFYGNFYYDEDREKC 530
            Q  G   + K  +  + + R  +F   FY+D DR+KC
Sbjct: 1316 QPAGKSCLDKFDERYLEDCRHGEFTNRFYFDHDRKKC 1352


>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform a protein.
          Length = 2007

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 420  QENGNPKIQKNVKDVIPESRLAQFYGNFYYDEDREKC 530
            Q  G   + K  +  + + R  +F   FY+D DR+KC
Sbjct: 1317 QPAGKSCLDKFDERYLEDCRHGEFTNRFYFDHDRKKC 1353


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,748,635
Number of Sequences: 27780
Number of extensions: 320810
Number of successful extensions: 840
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)