Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19f10
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    29   0.55 
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    27   2.2  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    26   3.9  
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    26   3.9  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    26   5.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.0  

>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 510 DELKRNKHATWVVCLYAAWHPACVNFAPVFAELSSSYSLD 629
           D++  ++    +V  YA W   C N AP + +L+  YS D
Sbjct: 366 DDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDD 405


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 504 LEDELKRNKHATWVVCLYAAWHPACVNFAPVFAELSSSY 620
           LE+ ++ +K    ++  YA W   C + APV+ EL + +
Sbjct: 31  LENTIRASKKGA-LIEFYATWCGHCKSLAPVYEELGALF 68


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 516 LKRNKHATWVVCLYAAWHPACVNFAPVFAELSSSYSL 626
           +++NK+A++   L +AW+ A ++F P+F  L    SL
Sbjct: 138 IEQNKYASF---LASAWNTALLHFTPLFNLLEGMASL 171


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 543 VVCLYAAWHPACVNFAPVFAELSSSYS 623
           VV  +A W   C   AP F + S++YS
Sbjct: 22  VVDFFATWCGPCKAIAPKFEQFSNTYS 48


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 555 YAAWHPACVNFAPVFAELSSSYS 623
           YA W   C   +P+F++L+S Y+
Sbjct: 27  YADWCGPCKAISPLFSQLASKYA 49


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = +1

Query: 382 STPTLGTVFPMQPRSYSWLCSFRSQRIQDRNTSPTSEDPSPWRTS*NATSTPPGSCVCTQ 561
           ST + GT     P S S  C+  S  I     S T   P+   TS ++TSTPP     + 
Sbjct: 321 STSSTGTSSSPLP-STSTSCT-TSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSS 378

Query: 562 HGT 570
            GT
Sbjct: 379 TGT 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,903
Number of Sequences: 5004
Number of extensions: 54382
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)