Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19f10
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814... 33 0.14
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 33 0.25
05_05_0229 - 23457438-23457629,23457706-23457828,23457913-234580... 30 1.7
12_02_0670 - 21700523-21700932,21701266-21701390,21701476-217016... 29 2.3
05_02_0038 + 5890103-5890522,5891442-5891515,5891605-5891680,589... 29 2.3
08_01_0231 + 1851689-1851733,1851854-1852139,1852777-1853444 28 7.0
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349... 28 7.0
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 27 9.3
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 27 9.3
>03_06_0376 +
33479776-33479958,33481055-33481236,33481345-33481469,
33481858-33482057,33482629-33482762,33483095-33483158,
33483764-33484441,33484723-33484839
Length = 560
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 498 ESLEDELK-RNKHATWVVCLYAAWHPACVNFAPVFAELSSSY 620
E++ EL R++ T+ V YAAW P F P+F LS+ +
Sbjct: 65 EAIAKELNLRHRGVTYSVLFYAAWCPFSSKFRPIFEALSTMF 106
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 492 GPESLEDELKRNKHATWVVCLYAAWHPACVNFAPVFAELSSSYSLD 629
GP++ D + +++ +V YA W C + AP++ +L+S Y LD
Sbjct: 125 GPDNF-DSIVLDENKDILVEFYAPWCGHCKHLAPIYEKLASVYKLD 169
>05_05_0229 -
23457438-23457629,23457706-23457828,23457913-23458026,
23462062-23462597,23463258-23464545
Length = 750
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 528 KHATWVVCLYAA-WHPACVNFAPVFAELSSSY 620
+H VV ++A W C N AP+FAELS Y
Sbjct: 642 EHGKTVVLKFSAIWCTPCRNAAPLFAELSLKY 673
>12_02_0670 -
21700523-21700932,21701266-21701390,21701476-21701651,
21702937-21703128
Length = 300
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 498 ESLEDELKRNKHATWVVCLYAAWHPACVNFAPVFAELSSSY 620
E L EL + T V YA+W P PVF +LSS +
Sbjct: 68 EELVKELSGKEECT-AVLFYASWCPFSQRMRPVFDDLSSMF 107
>05_02_0038 +
5890103-5890522,5891442-5891515,5891605-5891680,
5891892-5891959,5892189-5892312,5892714-5892812,
5893576-5893677,5893759-5893895,5894068-5894149,
5894668-5894730,5895680-5895727,5895833-5895895,
5896055-5896108,5896190-5896294
Length = 504
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 315 VTMVNYLSSSFVYTKIANLILWFYADIRYGLP 410
+ + YL S F T + N+I WF+ I YG P
Sbjct: 456 IVLTAYLKSKFRDTMVGNMIFWFFFCI-YGQP 486
>08_01_0231 + 1851689-1851733,1851854-1852139,1852777-1853444
Length = 332
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 382 STPTLGTVFPMQ-PRSYSWLCSFRSQRIQDRNTSPTSEDPSP 504
+ P +G P++ P+ W+ S S D + S +S+DPSP
Sbjct: 192 AVPVVGISEPLRFPQFQEWVLSTLSPPPTDADHSSSSDDPSP 233
>01_01_0474 -
3488739-3488876,3488996-3489118,3489878-3489991,
3490416-3490452,3490584-3490675,3490878-3490956,
3491640-3491734,3491858-3491991,3492560-3492833,
3493743-3494015,3494976-3495512
Length = 631
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 525 NKHATWVVCLY-AAWHPACVNFAPVFAELSSSY 620
NK V+ + AAW C APV+AE+S +Y
Sbjct: 540 NKDGKIVIANFSAAWCGPCRVIAPVYAEMSQTY 572
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 607 SSAKTGAKFTQAGCHAAYRHTTQVACLLRFNSSS 506
S+ K ++ T G AY H ++ C++ NS +
Sbjct: 972 SADKKSSRLTAEGLIGAYIHDNRIGCMIEINSET 1005
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 543 VVCLYAAWHPACVNFAPVFAELSSSYSLD 629
+V YA W C + AP++ +L+S Y D
Sbjct: 170 LVEFYAPWCGHCKHLAPIYEKLASVYKQD 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,906,417
Number of Sequences: 37544
Number of extensions: 346486
Number of successful extensions: 948
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -