Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19f09
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    27   2.1  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   5.0  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   5.0  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   8.7  

>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 456 YEHTNKQTMSIVKFLRRSVQFETG 527
           + + N+Q  S+V+  R SV+FETG
Sbjct: 536 FRNFNEQVTSVVQVHRESVRFETG 559


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 519  QTVRFCAGISQWTLSVCLYVHNNTYTSS 436
            + +R C  +  W  +V LYVH+ +Y ++
Sbjct: 1343 KVIRACDQMHLWNEAVFLYVHDQSYDNA 1370


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +3

Query: 441  TCR--YYYEHTNKQTMSIVKFLRRSVQFETGSS 533
            +CR   ++E+ ++Q  + +KFL ++VQ  TG++
Sbjct: 1339 SCRGSVHFEYNDEQLYNQIKFLLKAVQTTTGAT 1371


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 192  CECSSTGTRSSWAYKN 145
            C C  TG  S W +KN
Sbjct: 2436 CSCFYTGANSEWLHKN 2451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,664
Number of Sequences: 5004
Number of extensions: 49116
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)