Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19f09
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700...    29   2.9  
04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167...    27   8.8  

>01_06_1699 -
           39269477-39269574,39269690-39269929,39270029-39270092,
           39270251-39270771,39271032-39271326,39271400-39271564,
           39271650-39272237,39272617-39272703,39272982-39274429,
           39274515-39275015,39275574-39275678,39276095-39276143
          Length = 1386

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +1

Query: 220 LLNQYQWETTRFDIRT*LYEII---LMQFKLSCPIQGVIFWLKVLRVSVSTYARCL 378
           +L  + WET  FD    L ++    L ++  +C     +FW     VSV T+  C+
Sbjct: 400 ILKLHAWETAYFDKLLNLRDVERGWLRKYLYTCSAIAFLFWASPTLVSVVTFGVCI 455


>04_04_0396 +
           24915880-24916222,24916318-24916577,24916689-24916784,
           24916889-24917059,24917262-24917975
          Length = 527

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 271 LYEIILMQFKLS-CPIQGVIFWLKVL 345
           L  ++L Q  L  CP +GV+FW +VL
Sbjct: 305 LLGVLLYQISLKDCPFRGVLFWGQVL 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,531,437
Number of Sequences: 37544
Number of extensions: 267230
Number of successful extensions: 531
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)