Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19f08
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414... 31 0.61
08_02_1610 + 28217078-28217488 29 2.5
06_01_0914 - 7047865-7049223 29 4.3
03_02_0314 + 7398247-7400877 28 5.7
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784... 28 7.5
07_03_0579 + 19649978-19650442 28 7.5
07_03_0568 - 19593265-19593729 28 7.5
06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641... 28 7.5
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 28 7.5
>04_04_0285 - 24136865-24137000,24137554-24137611,24138142-24141480,
24141789-24142218,24142861-24142928,24143015-24143165
Length = 1393
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 186 DPNNETKEINNNVSETRFSTFKPQHRINTRDRQNNNNQISKTNHDVEYSKD 338
DPN++ ++I+N V + FS + + R+ ++NNNN I ++ + KD
Sbjct: 1123 DPNSDHRDIDNGVQDFSFSVAQ-EGRMEHDRKENNNNVIWNSSMLTQDPKD 1172
>08_02_1610 + 28217078-28217488
Length = 136
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 483 VRDSKRTSTRSWI--FDTAEDRKGKEEFFDELEKAERKHDKVMN 608
+RDS R S R W+ FDTAE+ +D A R H V+N
Sbjct: 37 IRDSSRQSVRVWLGTFDTAEE---AARAYDRAAYAMRGHLAVLN 77
>06_01_0914 - 7047865-7049223
Length = 452
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = -1
Query: 183 KRAAIFGDSEVSIETNVSAVLRACLLLFRIVYADLVPRTRYLW-LVFPATKV 31
K A GDS + L A + +VY D PR R W FPA V
Sbjct: 158 KHVAFVGDSMARNQAESLVCLLATAFPYTLVYRDPHPRERKFWRWAFPAHNV 209
>03_02_0314 + 7398247-7400877
Length = 876
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 310 QITTLNIQRIQSLGSNEGTAVWITSIQTTEQEIHIIGPGSETAQDGDPLRSKRIATR 480
+++ L + SN G A+ + S+ +TE + GP + A + PL + + +R
Sbjct: 374 RLSELRPSKEHEWASNSGFAILVGSLWSTEFNLFFCGPKEQDATENAPLYAWDLPSR 430
>07_03_1769 +
29377784-29377878,29377993-29378180,29378340-29378472,
29378580-29378715,29378996-29379072,29379162-29380830,
29380935-29381018,29381120-29381224,29381302-29381358
Length = 847
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +1
Query: 226 PRRDSARLNHNTESIQGTDRIITIKSAKQITTLNIQRIQSLGSNEGTAVWITSIQTTEQE 405
P +DS +NH + I +K+ +++ +Q S+E + IQ +E
Sbjct: 625 PGKDSEEINHQEKDIIQPSEGEILKTTEEVCEPTVQ------SDESPPEQHSEIQPQREE 678
Query: 406 IHIIGPGSETAQDGDPLRS 462
IH G G + + LR+
Sbjct: 679 IHQTGNGDSDCNNKNNLRA 697
>07_03_0579 + 19649978-19650442
Length = 154
Score = 27.9 bits (59), Expect = 7.5
Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
Frame = +1
Query: 202 LKRSTITSPRRDSARLNHNTESIQGTDRIITIKSAKQITTLNIQRIQSLGSNEGTAVWIT 381
+ R+ ++ S R N S + D + ++ T ++ + LG AV ++
Sbjct: 16 IHRAVDAKGKKPSGRSPVNEMSFKKGDEVRVRTPLGRLGTTTLRLVMWLG-----AVVVS 70
Query: 382 SIQTTEQEIHIIGPGSETAQDGDPLRSKRIATRSLEIRNERP-PV-AGSSIPLKTEKGKK 555
+ H+ + DP R+ R+A + ++++ RP P A + P T GK
Sbjct: 71 DADAADDNGHLEVIYNGNFPRDDPFRAVRVAVKDVKLQGPRPAPTPANMAAPRPTTAGKS 130
Query: 556 SSLMN*RKLKGNTIRS 603
+ + L+ +R+
Sbjct: 131 LPRLKMQMLEKEQLRA 146
>07_03_0568 - 19593265-19593729
Length = 154
Score = 27.9 bits (59), Expect = 7.5
Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
Frame = +1
Query: 202 LKRSTITSPRRDSARLNHNTESIQGTDRIITIKSAKQITTLNIQRIQSLGSNEGTAVWIT 381
+ R+ ++ S R N S + D + ++ T ++ + LG AV ++
Sbjct: 16 IHRAVDAKGKKPSGRSPVNEMSFKKGDEVRVRTPLGRLGTTTLRLVMWLG-----AVVVS 70
Query: 382 SIQTTEQEIHIIGPGSETAQDGDPLRSKRIATRSLEIRNERP-PV-AGSSIPLKTEKGKK 555
+ H+ + DP R+ R+A + ++++ RP P A + P T GK
Sbjct: 71 DADAADDNGHLEVIYNGNFPRDDPFRAVRVAVKDVKLQGPRPAPTPANMAAPRPTTAGKS 130
Query: 556 SSLMN*RKLKGNTIRS 603
+ + L+ +R+
Sbjct: 131 LPRLKMQMLEKEQLRA 146
>06_01_0844 -
6411121-6411129,6411671-6411796,6411980-6412043,
6412568-6412695,6412855-6412971,6414936-6415475,
6415554-6417344,6418359-6421407,6421765-6421823,
6422738-6422791
Length = 1978
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +1
Query: 274 GTDRIITIKSAKQITTL-NIQRIQSLGSNEGTAVW--ITSIQTTEQEIHIIGPGSETAQD 444
G D +I + ++ Q TL N + E ++V + S +TT+Q + ++GPG+ET
Sbjct: 227 GVDILIKLVASGQANTLANACNLLGALMMEDSSVCSKVLSGETTKQLLKLLGPGNETYIR 286
Query: 445 GDPLRS-KRIATRSLEIRNE 501
+ + K ++ +S E R +
Sbjct: 287 AEAAGALKSLSAQSKEARRQ 306
>03_05_0725 + 27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -1
Query: 186 RKRAAIFGDSEVSIETNVSAVLR---ACLLLFRIVYADLVPRTRYLWLVFPATKVLPTKR 16
R++ G S+ ++E ++S R C+ + I+Y +L+ + R LW + A L T +
Sbjct: 1402 RRKNPNIGGSKKNLEVSLSESSRKFITCIRKYMILYLNLLEKNRDLWTLERAYTYLRTDK 1461
Query: 15 K 13
+
Sbjct: 1462 R 1462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,732
Number of Sequences: 37544
Number of extensions: 321456
Number of successful extensions: 939
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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