Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19f06
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    40   3e-04
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    27   1.3  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   2.3  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.3  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   3.0  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    26   4.0  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    26   4.0  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   4.0  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   5.3  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    25   7.0  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   7.0  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   9.3  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    25   9.3  

>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 6/76 (7%)
 Frame = +2

Query: 119 CKKREKTAS-NLNESIKAKLKESLTQNTVVTGDTASNQISRTR--QSNV---KKEGFYNF 280
           CK+ E++ +  +NE     L+E L++      D++++Q +RTR  ++N+   +K GF ++
Sbjct: 37  CKESEESCTYGVNEQAVQLLEEPLSRPITRETDSSAHQETRTRLEENNLPKTQKFGFVDW 96

Query: 281 KSMLLRSVESQGVVQQ 328
           K++L  S E QG+VQ+
Sbjct: 97  KTILKSSAEFQGIVQR 112


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 373 NQKVISIYQPRTNATGKWICRDPFSVNPNEIR 468
           N+ ++  Y   T A G  + R PF++NP + R
Sbjct: 100 NEPLVGNYYISTEALGDGLNRSPFTINPEKRR 131


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 113 KECKKREKTASNLNES--IKAKLKESLTQNTVVTGDTASNQISRTRQSNVKKEGFYNF 280
           K+   R + AS+L E+  +  K  ++ T     T +  ++ + R RQ+N+K +   NF
Sbjct: 750 KKENNRIRNASSLMENPRVSTKTFDNFTLTHDSTINVKADTVKRARQNNIKNKDDVNF 807


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 280 QEHVVAKRGVARRRPTEESEQTHEKTCEK 366
           QEH   + G++R   TEES +THE   EK
Sbjct: 413 QEHT-DELGMSRANTTEESAETHEVIEEK 440


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 203 VTGDTASNQISRTRQSNVKKEGFYNFKSMLLRSVES 310
           +   T+ + +   RQ  + KEG Y F +M +R V +
Sbjct: 230 ILNPTSDSDVDLIRQYFIPKEGTYTFSNMHIRYVSA 265


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 38  EFESRWFLGAV*MKSVEKKILAAMNKECKKREKT 139
           E ES W LG +      KKIL  + K+ KK EKT
Sbjct: 274 EEESSWGLGKL------KKILKMLEKDSKKDEKT 301


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 89  KKILAAMNKECKKREKTASNLNESIK---AKLKESLTQNTVVT 208
           KKILA + ++ K+R     N N S+K   A +K+    N+  T
Sbjct: 116 KKILAEIERDKKRRAAERENKNSSVKETAAPIKQPKNANSSST 158


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 355 TCEKCQNQKVISIYQPRTNATGK 423
           +C+ C N KV  I+  R N  GK
Sbjct: 40  SCQACSNNKVECIWPDRPNMRGK 62


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 337 EQTHEKTCEKCQNQKVISIYQPRTNAT 417
           E   E++ E+C+ Q+ +S  QP T A+
Sbjct: 279 ENGEERSMEECRAQRYLSSIQPNTAAS 305


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 113 KECKKREKTASNLNESIKAKLKESLTQNT 199
           +E K+R  TA++    IK KLKE   + T
Sbjct: 267 EEDKRRRNTAASARFRIKKKLKEQQLERT 295


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 520 NSMNGLFKHSNVGNKFTSVSR*DSLKRDLCRSIF 419
           +S+ G+F+  N+  +FTS  R      +L R ++
Sbjct: 463 HSLEGMFRDVNISKEFTSSFRHSKAAHNLHRDLY 496


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 520 NSMNGLFKHSNVGNKFTSVSR*DSLK 443
           NS+N L KH  +GN+     R +S K
Sbjct: 839 NSVNKLMKHVMMGNEMMKYPRSESFK 864


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +2

Query: 113 KECKKREKTASNLNESIKAKLKESLTQNTVVTGDTASNQISRTRQSNVKKEGFYNFKSML 292
           +E +KRE+ +SNL+E    K +E++ ++   TG      ++R       KE     +   
Sbjct: 132 EERRKREEKSSNLDEEELRKSRETVYRD--ATGRRIDLVLARKEAKRKLKE---KEEEAR 186

Query: 293 LRSVESQGVVQ 325
            +  + QGVVQ
Sbjct: 187 RQKEQQQGVVQ 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,368
Number of Sequences: 5004
Number of extensions: 31521
Number of successful extensions: 93
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)