Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19f06
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,300... 31 0.44
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751... 27 7.1
11_06_0685 - 26272928-26273110,26273186-26273257,26273339-262734... 27 9.4
11_06_0459 + 23830204-23830350,23830419-23830592,23830738-238308... 27 9.4
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 27 9.4
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 27 9.4
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309... 27 9.4
>06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,
3001969-3002274,3002365-3002579,3003047-3003341,
3003487-3003651,3003745-3004341,3004855-3004941,
3005022-3005342,3006218-3008242
Length = 1474
Score = 31.5 bits (68), Expect = 0.44
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = -2
Query: 270 NPSFFTLLCLVLEI*FDAVSPVTTVFCVNDSFNLALMLSFRLEAVFSRFLHSLFMAANIF 91
NPS TL +V+ I A+ T F ++ S ++ ++ ++FS+ L+SLF A F
Sbjct: 942 NPSVSTLKLIVVYI---AIGVCTLFFLLSRSLSIVVLGMQTSRSLFSQLLNSLFRAPMSF 998
Query: 90 FST 82
F +
Sbjct: 999 FDS 1001
>04_03_0258 -
13573730-13573816,13573881-13574666,13575043-13575126,
13575254-13575322,13575324-13576228,13576517-13576784
Length = 732
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 277 LQEHVVAKRGVARRRPTEESEQTHEKTCEKCQNQKVISIYQPRTN 411
L E + ++ + +P EES Q + CEK QN ++I + +N
Sbjct: 626 LMEIISGRKNIDFSQP-EESVQLIKLLCEKAQNNQLIDMVDKHSN 669
>11_06_0685 -
26272928-26273110,26273186-26273257,26273339-26273425,
26273566-26273655,26273741-26273785,26273872-26274054,
26274333-26274392,26274521-26274703,26274779-26274907,
26275083-26275380,26275454-26275608,26275791-26275929,
26276015-26276096,26276167-26276285,26276367-26276494,
26276640-26276813,26276882-26277028
Length = 757
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 295 AKRGVARRRPTEESEQTHEKTCEKCQNQKVISI 393
AK+G T+ +++ + CEK N K IS+
Sbjct: 600 AKKGKCSEMKTQRNKEPYTTDCEKIANDKPISL 632
>11_06_0459 +
23830204-23830350,23830419-23830592,23830738-23830865,
23830947-23831065,23831136-23831217,23831303-23831441,
23831624-23831778,23831852-23832149,23832325-23832453,
23832529-23832711,23832840-23832899,23832973-23833101,
23833177-23833359,23833446-23833490,23833576-23833665,
23833806-23833892,23833974-23834045,23834120-23834302
Length = 800
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 295 AKRGVARRRPTEESEQTHEKTCEKCQNQKVISI 393
AK+G T+ +++ + CEK N K IS+
Sbjct: 643 AKKGKCSEMKTQRNKEPYTTDCEKIANDKPISL 675
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 295 AKRGVARRRPTEESEQTHEKTCEKCQNQKVISI 393
AK+G T+ +++ + CEK N K IS+
Sbjct: 643 AKKGKCSEMKTQRNKEPYTTDCEKIANDKPISL 675
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 295 AKRGVARRRPTEESEQTHEKTCEKCQNQKVISI 393
AK+G T+ +++ + CEK N K IS+
Sbjct: 822 AKKGKCSEMKTQRNKEPYTTDCEKIANDKPISL 854
>03_04_0151 -
17729023-17729372,17729441-17730623,17730723-17730953,
17730975-17731036,17732085-17732157,17737044-17737834,
17737932-17738004
Length = 920
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 122 KKREKTASNLNESIKAKLKESLTQNTVVTGDTASNQISRTRQSNV 256
K+ TAS S K LK+SL+ + T ++ S R+SNV
Sbjct: 752 KQEATTASTEAHSAKVVLKKSLSSPAISRSLTTTSSSSPKRRSNV 796
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,867,143
Number of Sequences: 37544
Number of extensions: 177169
Number of successful extensions: 443
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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