Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19f04
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 29 0.71
SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|... 27 2.2
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot... 27 2.2
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 27 3.8
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 5.0
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb... 26 5.0
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M... 26 6.6
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 26 6.6
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 25 8.7
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 25 8.7
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 0.71
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -2
Query: 738 LEYVKGFNGAIE-YKPASDTFLINTDALKRDLYIS 637
L+ KG+ A++ +KP +D ++ T+ LK+DL S
Sbjct: 78 LQKQKGYLAAVQSFKPDTDVLMLTTNLLKKDLMSS 112
>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 174
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 675 INTDALKRDLYISTFETMFSSSRRRQFRPTTLSISSVHMNLRSRTTRRLNFERV-SIQNG 499
+ T + ++ +S SS RQF T S + V + + S+ T FER+ + G
Sbjct: 68 MKTKTIHSEVILSLSPKTEISSAFRQFSMTKKSKNIVVVKIDSKLTEEEEFERLDKLVEG 127
Query: 498 WGIELSRSHLRKTV 457
+E S L+K +
Sbjct: 128 NRVEFSDEELQKLI 141
>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 283
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 509 IETLSKFSRLVVLDLKFICTDEILNVVGLNCLLLEE 616
+ET+ KF RL V L + TD+ +N G++ + EE
Sbjct: 242 LETIVKFIRLNVYRLSCLSTDDFINGKGVHFVPPEE 277
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 116 ILHIIINNSIFVLSKTYCAHYCVVSTYHIFMQWSQKCH 3
IL +++++S K+ C +C V T I +W C+
Sbjct: 312 ILRLVLDDS----RKSVCFGFCYVDTLKILQKWGSGCY 345
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = -3
Query: 134 IHYFCDILHIIINNSIF-VLSKTYCAHYCV----VSTYHIF 27
I Y C I + + NSIF +LS Y + CV +S Y+ F
Sbjct: 1288 IFYPCPIAYTYVRNSIFLILSICYTINICVKVYGLSFYYFF 1328
>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 146 KCTFIHYFCDILHIIINNS-IFVLSKT 69
+C FI YF +LH+ IN S +F+ + T
Sbjct: 38 QCLFIVYFFYLLHVRINTSPLFIKTTT 64
>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 155
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 410 RGDPRIQLHVLTHPNMTVFRKCDLDNSIPQPF 505
RG R HV+ HPN T +L +P P+
Sbjct: 84 RGSVRYT-HVMAHPNTTTTVSENLPEEVPPPY 114
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 482 DNSIPQPFWIETLSKFSRLVVLDLKFIC 565
D SIP+PF I+TL K + L V + C
Sbjct: 17 DGSIPEPFKIKTLPKDTVLNVTKIPSEC 44
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 434 HVLTHPNMTVFRKCDLDNSIPQPFWIETLSKFSRL 538
++L HP T+ + +PQPF I ++K S L
Sbjct: 354 NLLNHPEGTMTNLLPPNMEMPQPFEIPVIAKTSAL 388
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 584 VVGLNCLLLEELNIVSKVDIYKSLFN 661
V L+C LL+ N S + YK LFN
Sbjct: 54 VRSLDCRLLKHKNEASHKNFYKKLFN 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,412
Number of Sequences: 5004
Number of extensions: 60794
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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