Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19f04
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0731 - 6516894-6517473,6517485-6519574 37 0.015
12_01_0727 + 6446283-6449300 33 0.18
06_02_0270 - 13613853-13614153,13614233-13614403,13614486-136153... 33 0.32
06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323 30 1.7
12_01_0730 + 6505759-6508806 29 3.9
12_01_0714 + 6223269-6226250 29 3.9
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 28 9.1
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 37.1 bits (82), Expect = 0.015
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +2
Query: 440 LTHPNMTVFRKCDLDNSIPQPFWIETLSKFSRLVVLDLKF--ICTDEILNVVGLNCLLLE 613
LT N+ F C L IP I L+K ++L + + F + +ILN+ L LLL
Sbjct: 405 LTSLNVLKFFSCGLSGPIPAS--IGNLTKLTKLALYNCHFSGVIAPQILNLTHLQYLLLH 462
Query: 614 ELNIVSKVDI--YKSLFNASVL 673
N+V V++ Y + N S L
Sbjct: 463 SNNLVGTVELSSYSKMQNLSAL 484
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 33.5 bits (73), Expect = 0.18
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +2
Query: 440 LTHPNMTVFRKCDLDNSIPQPFWIETLSKFSRLVVLDLKFI--CTDEILNVVGLNCLLLE 613
LT + F C L IP I L+K ++L + + F +ILN+ L LLL
Sbjct: 398 LTSLTILKFFSCGLSGPIPAS--IGNLTKLTKLALYNCHFSGEIPPQILNLTHLQSLLLH 455
Query: 614 ELNIVSKVDI--YKSLFNASVL 673
N V V++ Y + N SVL
Sbjct: 456 SNNFVGTVELASYSKMQNLSVL 477
>06_02_0270 -
13613853-13614153,13614233-13614403,13614486-13615318,
13615401-13615746,13615940-13616127,13616238-13616408
Length = 669
Score = 32.7 bits (71), Expect = 0.32
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = -2
Query: 627 TMFSSSRRRQFRPTTLSISSVHMNLRSRTTRRLNFERVSIQNGWGIELSR---SHLRKTV 457
T +S RRQ+ P + M+L R LN E ++ G G++ +R SHLR V
Sbjct: 55 TEAGTSARRQYGPKKMQPLQQQMSL-PRFQTSLNKE-LATGCGQGVKSTRTALSHLRTKV 112
Query: 456 MLGCVNTWS*IRGSPRYWQH 397
ML + W GS W+H
Sbjct: 113 MLSSIRNWG--IGSDVPWKH 130
>06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323
Length = 905
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 398 CCQYRGDPRIQLHVLTHPNMTVFRKCDLDN---SIPQPFWIETLSKFSRLVVLDL 553
C + P L+ L+H N T R DL + S P WI SK S L LDL
Sbjct: 226 CLNHAFLPATDLNALSHTNFTAIRVLDLKSNNFSSRMPDWI---SKLSSLAYLDL 277
>12_01_0730 + 6505759-6508806
Length = 1015
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 452 NMTVFRKCDLDNSIPQPFWIETLSKFSRLVVLDLKFICT--DEILNVVGLNCLLLEELNI 625
++TV R + S P P I L + + L + + F T +ILN+ L LLL N
Sbjct: 411 SLTVLRISNCGLSGPVPSSIGNLRELTTLALYNCNFSGTVPPQILNLTRLQTLLLHSNNF 470
Query: 626 VSKVDI 643
VD+
Sbjct: 471 AGTVDL 476
>12_01_0714 + 6223269-6226250
Length = 993
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 452 NMTVFRKCDLDNSIPQPFWIETLSKFSRLVVLDLKFICT--DEILNVVGLNCLLLEELNI 625
++TV R + S P P I L + + L + + F T +ILN+ L LLL N
Sbjct: 389 SLTVLRISNCGLSGPVPSSIGNLRELTTLALYNCNFSGTVHPQILNLTRLQTLLLHSNNF 448
Query: 626 VSKVDI 643
VD+
Sbjct: 449 AGTVDL 454
>11_04_0460 - 17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 593 LNCLLLEELNIVSKVDIYKSLFNASV-LIRNVSDAGLYSIAPLKPFTYSSDGPA 751
L CLLL E NI+S+ + S ++ V +I+ + +YS+ L F S G A
Sbjct: 869 LGCLLLAEHNIISEAFLTASSWSRCVIMIQRYKEVLVYSVL-LAKFEPSQSGKA 921
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,042,451
Number of Sequences: 37544
Number of extensions: 355668
Number of successful extensions: 895
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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