Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19e24
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S57284-1|AAB25906.1|  437|Caenorhabditis elegans S-adenosylhomoc...   248   3e-66
M64306-1|AAA28062.1|  437|Caenorhabditis elegans S-adenosylhomoc...   248   3e-66
AF043699-5|AAB97565.1|  437|Caenorhabditis elegans Hypothetical ...   248   3e-66
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    29   2.2  
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit...    28   5.0  

>S57284-1|AAB25906.1|  437|Caenorhabditis elegans
           S-adenosylhomocysteine hydrolase protein.
          Length = 437

 Score =  248 bits (607), Expect = 3e-66
 Identities = 116/166 (69%), Positives = 132/166 (79%)
 Frame = +2

Query: 152 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 331
           KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVL
Sbjct: 5   KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVL 64

Query: 332 IETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDG 511
           IETL  LGAEVQWSS NI+STQD AAAA+   G+P+YAWKGETD+EY WCIEQT++F DG
Sbjct: 65  IETLTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDG 124

Query: 512 KPLNMILDDGGDLTNLVHTKYPDLFXXXXXXXXXXXXXGVHNLYKM 649
           +PLNMILDDGGDLTNLVH KYP  +             GVHNL KM
Sbjct: 125 QPLNMILDDGGDLTNLVHAKYPQ-YLAGIRGLSEETTTGVHNLAKM 169


>M64306-1|AAA28062.1|  437|Caenorhabditis elegans
           S-adenosylhomocysteine hydrolase protein.
          Length = 437

 Score =  248 bits (607), Expect = 3e-66
 Identities = 116/166 (69%), Positives = 132/166 (79%)
 Frame = +2

Query: 152 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 331
           KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVL
Sbjct: 5   KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVL 64

Query: 332 IETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDG 511
           IETL  LGAEVQWSS NI+STQD AAAA+   G+P+YAWKGETD+EY WCIEQT++F DG
Sbjct: 65  IETLTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDG 124

Query: 512 KPLNMILDDGGDLTNLVHTKYPDLFXXXXXXXXXXXXXGVHNLYKM 649
           +PLNMILDDGGDLTNLVH KYP  +             GVHNL KM
Sbjct: 125 QPLNMILDDGGDLTNLVHAKYPQ-YLAGIRGLSEETTTGVHNLAKM 169


>AF043699-5|AAB97565.1|  437|Caenorhabditis elegans Hypothetical
           protein K02F2.2 protein.
          Length = 437

 Score =  248 bits (607), Expect = 3e-66
 Identities = 116/166 (69%), Positives = 132/166 (79%)
 Frame = +2

Query: 152 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 331
           KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVL
Sbjct: 5   KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVL 64

Query: 332 IETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDG 511
           IETL  LGAEVQWSS NI+STQD AAAA+   G+P+YAWKGETD+EY WCIEQT++F DG
Sbjct: 65  IETLTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDG 124

Query: 512 KPLNMILDDGGDLTNLVHTKYPDLFXXXXXXXXXXXXXGVHNLYKM 649
           +PLNMILDDGGDLTNLVH KYP  +             GVHNL KM
Sbjct: 125 QPLNMILDDGGDLTNLVHAKYPQ-YLAGIRGLSEETTTGVHNLAKM 169


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
           protein H16O14.1 protein.
          Length = 977

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 415 CSCGLVLCTI-NVTAGPLYLCSQFY*SLNKNRCLYCHV*AAGYSGTFEYFSWSI 257
           C CG+++  I N+TA         Y  +N    L   + + G+   F YF WS+
Sbjct: 442 CECGILIAVIENITALITQFFLMCYLGVNAACALQSLLKSPGWRPGFRYFHWSL 495


>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw
           (imitation swi) homologprotein 1 protein.
          Length = 1009

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
 Frame = +2

Query: 32  RERVLQYQVPIYFR-YFNKNNLKRKQ----QVNLP*VYQTLYYKMKPPYKIADEKLAEWG 196
           RER   YQV +Y++      N   KQ    +  LP V+   +Y  +  +++ D+++  + 
Sbjct: 690 RERKANYQVDLYYKEAMRAGNPTEKQSKAPRPKLPQVFDFQFYPRR-LFELLDKEIYHYR 748

Query: 197 RKEIMLAE--KEMPGLMACRRKYAPAKILKGAR 289
           +    +AE  K++P   A +R+    K++  AR
Sbjct: 749 KTIGYVAERPKDVPPKEAEKRQAEEQKLINNAR 781


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,908,938
Number of Sequences: 27780
Number of extensions: 318080
Number of successful extensions: 661
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)