Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19e23
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 34 0.11
10_05_0074 - 8865884-8866567,8866612-8866923 29 2.3
06_03_0609 + 22710442-22713502,22713596-22713948 29 3.0
06_03_0599 + 22632625-22633030,22634733-22636724,22636819-22637171 29 3.0
02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723 29 4.0
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606... 28 5.3
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938... 28 5.3
08_02_0070 - 11897089-11898150,11898389-11898644,11898755-118990... 28 7.0
11_06_0125 - 20356683-20357071,20359531-20362285 27 9.2
01_05_0608 - 23628100-23631486 27 9.2
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124... 27 9.2
>04_04_0451 -
25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = -2
Query: 614 GLSCLGLGTRTHISSPQTNS*LSDSEYSSNTLMKASE*SLIFGFSCRCSASILSILADRL 435
G S LG GT ++ +T + SDS +SSNTL + S+ + S R S+L+ +++
Sbjct: 534 GTSALGYGTSAIVAMDKTAAISSDSSFSSNTL-RLSQSKTVGRSSERSLESVLNSSKEKV 592
Query: 434 SA 429
SA
Sbjct: 593 SA 594
>10_05_0074 - 8865884-8866567,8866612-8866923
Length = 331
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 389 GMVLLSKWSALVWTPTICPRGSIGY*RNIGKKIRRLMIIQMPSSK 523
G V LS W +++ T C G + R++G+ + I PS++
Sbjct: 190 GAVSLSAWFGTIYSRTACFAGLAHFVRSMGRGVEAAQIAPSPSAR 234
>06_03_0609 + 22710442-22713502,22713596-22713948
Length = 1137
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 124 LTMRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAV 303
L+ + +GSI++ V N + + + N LS ++ STL+ VV L +SNF
Sbjct: 616 LSYNYLSGSISDEVGNLVNLNKLIISY----NRLSGDIPSTLSQCVVLEYLEMQSNFFVG 671
Query: 304 NLKSGSTN 327
++ N
Sbjct: 672 SIPQTFVN 679
>06_03_0599 + 22632625-22633030,22634733-22636724,22636819-22637171
Length = 916
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 124 LTMRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAV 303
L+ + +GSI++ V N + + + N LS ++ STL+ VV L +SNF
Sbjct: 396 LSYNYLSGSISDEVGNLVSLNKLIISY----NRLSGDIPSTLSQCVVLEYLEMQSNFFVG 451
Query: 304 NLKSGSTN 327
++ N
Sbjct: 452 SIPQTFVN 459
>02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723
Length = 757
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 214 DNDLSDEMSSTLNDVVVRSKLSNESNFLAVNLKSGSTNYTHFAQI 348
+N LS E+ S L ++ L+ NFL N+ +G N TH +
Sbjct: 582 NNSLSGEIPSELTNLRGIQSLNISRNFLQGNIPNGIGNLTHLESL 626
>12_01_0991 - 10057736-10058249,10058412-10059241,10059266-10060633,
10061785-10062327,10066274-10066498,10066590-10066640
Length = 1176
Score = 28.3 bits (60), Expect = 5.3
Identities = 25/94 (26%), Positives = 43/94 (45%)
Frame = +1
Query: 142 NGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNLKSGS 321
NG I E + KQ ++ + N+LS E+ S++ D+ ++ N L+ + G+
Sbjct: 1015 NGEIPETIGQLKQLESLDL----SHNELSGEIPSSMQDLNALGTMNLSYNNLSGRIPRGN 1070
Query: 322 TNYTHFAQIYQIVPVPSLFFIGRNGTPLEVVCAG 423
T ++ A Y + IG G PL C+G
Sbjct: 1071 TMGSYDASSY-------IGNIGLCGPPLTRNCSG 1097
>07_01_1199 +
11391638-11391718,11393477-11393590,11393690-11393826,
11393905-11394064
Length = 163
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 167 IYRNRGIQFSWFSYKVTMTCPTKCHRRLTMLWSDRNSQMNQTF 295
+Y GIQF K+ C +KCH+ M + R + + +
Sbjct: 13 VYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAY 55
>08_02_0070 -
11897089-11898150,11898389-11898644,11898755-11899059,
11899149-11899550
Length = 674
Score = 27.9 bits (59), Expect = 7.0
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -1
Query: 228 GQVIVTLYENHENCIPLFR 172
G+ IV ++NH++C+ +FR
Sbjct: 337 GKAIVKFFQNHQHCLAMFR 355
>11_06_0125 - 20356683-20357071,20359531-20362285
Length = 1047
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 196 VVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNLKS 315
V F N LS E+ STL + + +S ++NFL+ ++ S
Sbjct: 545 VQFYADSNKLSGEIPSTLGECQLLQNISLQNNFLSGSVPS 584
>01_05_0608 - 23628100-23631486
Length = 1128
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +1
Query: 124 LTMRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAV 303
L+ ++G+I + + KQ ++ + + N+LS E+ +L+ + S L+ N L+
Sbjct: 962 LSSNQFSGTIHDQIGDLKQLESLDLSY----NELSGEIPPSLSALTSLSHLNLSYNNLSG 1017
Query: 304 NLKSGSTNYTHFAQIYQIVPVPSL 375
+ SGS QIY V P L
Sbjct: 1018 TIPSGSQLQALDDQIYIYVGNPGL 1041
>01_01_0136 +
1237623-1237820,1238313-1239001,1239978-1240308,
1240614-1241351
Length = 651
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 467 ASILSILADRLSASTPAQTTSR 402
A+ILSI DR +A+TP TT+R
Sbjct: 622 AAILSIRIDRAAAATPKFTTTR 643
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,113,997
Number of Sequences: 37544
Number of extensions: 334364
Number of successful extensions: 837
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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