Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19e21
(478 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 1.1
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 4.5
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 25 4.5
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 25 4.5
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 25 4.5
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 25 5.9
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 5.9
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 5.9
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 25 7.9
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual 25 7.9
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo... 25 7.9
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 359 GLVNALWSRRDPDLCRSQPKIFRS-CLFASSTARP 258
G NA +R++ DL R + K+ S CL+A T RP
Sbjct: 671 GKCNACHARQE-DLIRGEQKVSHSNCLYADQTLRP 704
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 125 ARHDRDLYIKVHPRHIRPDKLHHFEKIRPDATFDLAYDYKSATHPAWQYWRQI 283
A + RD +I R R +K + + + D +Y Y SA + +YW+ +
Sbjct: 696 AENIRDWHID--ERMYRLNKTGRIDFMLQEGALDTSYSYVSAMNAHSEYWKNV 746
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.4 bits (53), Expect = 4.5
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 186 SIILRKYDLTP--RLIWRTTTKAPHTRPGSTGGK*AGPEYLRLRP 314
+II+ K + P R W T PHT P GK G +RL P
Sbjct: 127 AIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGK-CGSVTVRLVP 170
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 173 RPDKLHHFEKIRPDATFDLAYDYKSATHPAWQYWRQIGRTGISSV 307
RPD+ H + +AYDY+ T W Y I + +SS+
Sbjct: 311 RPDQYHTCYCLL--GLSSIAYDYRYHTSDGWSYKPSILHSSLSSL 353
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 4.5
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Frame = +3
Query: 105 WASTSKWPVTTATFTLRFTP---DTSDPISSIILRKY---DLTPRLIWRTTTKAPHTRPG 266
W+ S+W + +T TP + S S L K +L PR +W T + ++ PG
Sbjct: 362 WSEISRWALCGG-YTKDITPPWLNQSQFHRSFELLKAWHENLPPRAVWSYTNYSAYSSPG 420
Query: 267 STGG 278
+ G
Sbjct: 421 ESAG 424
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 5.9
Identities = 6/20 (30%), Positives = 15/20 (75%)
Frame = +2
Query: 113 YFEVARHDRDLYIKVHPRHI 172
++++ +H R + ++HPRH+
Sbjct: 71 HYKIIQHFRSRFREIHPRHV 90
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 5.9
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -1
Query: 271 VLPGRVCG-AFVVVRQIKRGVRSYFLKMMELIGS-DVSGVNLNVKVAVVTGHFEVEAQHR 98
+L G G A RQ+ G Y + + L G D+ G +N V G EV QH+
Sbjct: 642 MLTGDAVGIAKETARQLGMGTNVYNAERLGLSGGGDMPGSEVNDFVEAADGFAEVFPQHK 701
Query: 97 H 95
+
Sbjct: 702 Y 702
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 5.9
Identities = 7/22 (31%), Positives = 15/22 (68%)
Frame = -3
Query: 377 ITALRFGLVNALWSRRDPDLCR 312
+ A + GLV+ +W + P++C+
Sbjct: 628 VGASQGGLVHTIWKEKGPEICK 649
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 7.9
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Frame = +2
Query: 272 WRQIGRTG-----ISSVATYKDQDPDGSIMRSLGQNEELLSDI 385
WR +G G I T+KD DP+ M G +SD+
Sbjct: 14 WRCLGSEGNELIYIDEEQTWKDYDPNSLKMNKAGSTGAEVSDV 56
>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/44 (27%), Positives = 18/44 (40%)
Frame = +3
Query: 96 WRCWASTSKWPVTTATFTLRFTPDTSDPISSIILRKYDLTPRLI 227
W+ WA + + + +PD P I RK L P L+
Sbjct: 61 WQTWAKLNDPSIVFLNVSNHASPDEKVPFIQIESRKLVLNPSLL 104
>SPBC4B4.06 |vps25||ESCRT II complex subunit
Vps25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 263 WQYWRQIGRTGISSVATYKDQDPDGSIMRSLGQNEELLSDIDII 394
W YWR I G + D +GSI + + +E ++D +
Sbjct: 97 WVYWRSISEWGNMILKWLSDMGREGSIC-TFYELQEQYKEVDCL 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,684
Number of Sequences: 5004
Number of extensions: 44159
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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